PMID:19082552: Difference between revisions
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''' | '''Kropinski, AM, Borodovsky, M, Carver, TJ, Cerdeño-Tárraga, AM, Darling, A, Lomsadze, A, Mahadevan, P, Stothard, P, Seto, D, Van Domselaar, G and Wishart, DS''' (2009) In silico identification of genes in bacteriophage DNA. ''Methods Mol. Biol.'' '''502''':57-89 | ||
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!align=left |Abstract | !align=left |Abstract | ||
Latest revision as of 04:34, 15 September 2013
| Citation |
Kropinski, AM, Borodovsky, M, Carver, TJ, Cerdeño-Tárraga, AM, Darling, A, Lomsadze, A, Mahadevan, P, Stothard, P, Seto, D, Van Domselaar, G and Wishart, DS (2009) In silico identification of genes in bacteriophage DNA. Methods Mol. Biol. 502:57-89 |
|---|---|
| Abstract |
One of the most satisfying aspects of a genome sequencing project is the identification of the genes contained within it.These are of two types: those which encode tRNAs and those which produce proteins. After a general introduction on the properties of protein-encoding genes and the utility of the Basic Local Alignment Search Tool (BLASTX) to identify genes through homologs, a variety of tools are discussed by their creators. These include for genome annotation: GeneMark, Artemis, and BASys; and, for genome comparisons: Artemis Comparison Tool (ACT), Mauve, CoreGenes, and GeneOrder. |
| Links |
PubMed Online version:10.1007/978-1-60327-565-1_6 |
| Keywords |
Bacteriophages/genetics; Computational Biology/methods; DNA, Viral/analysis; DNA, Viral/genetics; Software |
| edit table |
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