PortEco Microarray Pipeline: Difference between revisions

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300 edits
Table edited by Janos via TableEdit
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!|Title/Dataset Description!!Reference!!Platform!!GEO Accession!!ArrayExpress Accession!!Data loaded!!Curation completed!!Notes
!|Title/Dataset Description!!Reference!!Platform!!GEO Accession!!ArrayExpress Accession!!Data loaded!!Curation completed!!Notes!!category/subcat
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E-MEXP-3800
E-MEXP-3800
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E-MEXP-3799
E-MEXP-3799
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E-GEOD-43325
E-GEOD-43325
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E-GEOD-29076
E-GEOD-29076
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E-GEOD-42702
E-GEOD-42702
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E-GEOD-34991
E-GEOD-34991
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E-GEOD-37026
E-GEOD-37026
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E-MTAB-1347
E-MTAB-1347
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E-GEOD-21820
E-GEOD-21820
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E-GEOD-22285
E-GEOD-22285
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E-GEOD-40693
E-GEOD-40693
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E-GEOD-40648
E-GEOD-40648
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E-GEOD-21652
E-GEOD-21652
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E-GEOD-36779
E-GEOD-36779
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E-GEOD-20380
E-GEOD-20380
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E-GEOD-39607
E-GEOD-39607
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E-GEOD-30679
E-GEOD-30679
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E-GEOD-30692
E-GEOD-30692
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E-GEOD-30424
E-GEOD-30424
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E-GEOD-34046
E-GEOD-34046
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E-GEOD-21857
E-GEOD-21857
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E-TABM-86
E-TABM-86
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E-GEOD-29803
E-GEOD-29803
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E-GEOD-40427
E-GEOD-40427
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E-GEOD-33212
E-GEOD-33212
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E-GEOD-42205
E-GEOD-42205
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E-GEOD-40557
E-GEOD-40557
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E-GEOD-39439
E-GEOD-39439
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E-GEOD-35049
E-GEOD-35049
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E-GEOD-35822
E-GEOD-35822
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E-GEOD-41093
E-GEOD-41093
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E-GEOD-41940
E-GEOD-41940
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E-GEOD-41938
E-GEOD-41938
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E-GEOD-26223
E-GEOD-26223
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E-MTAB-996
E-MTAB-996
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http://expression.porteco.org/MicroArray/data/E-GEOD-35371.sdrf.txt
http://expression.porteco.org/MicroArray/data/E-GEOD-35371.sdrf.txt
<br/>
<br/>
needs c3-c4  
needs c3-c4
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Transcript profiling/Magnetic field
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JD<br/>  
JD<br/>
http://expression.porteco.org/MicroArray/data/E-GEOD-35371.idf.txt<br/>
http://expression.porteco.org/MicroArray/data/E-GEOD-35371.sdrf.txt<br/>
needs c3-c4
|
evolution/chemostat


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Revision as of 20:05, 26 February 2013

Title/Dataset Description Reference Platform GEO Accession ArrayExpress Accession Data loaded Curation completed Notes category/subcat

Transcription profiling by array of differential utilization of carbon sources in Escherichia coli based on previous nutritional conditions

E-MEXP-3800

E-MEXP-3799

E-GEOD-43325

E-GEOD-29076

E-GEOD-42702

E-GEOD-34991

E-GEOD-37026

E-MTAB-1347

E-GEOD-21820

E-GEOD-22285

E-GEOD-40693

E-GEOD-40648

E-GEOD-21652

E-GEOD-36779

E-GEOD-20380

E-GEOD-39607

E-GEOD-30679

E-GEOD-30692

E-GEOD-30424

E-GEOD-34046

E-GEOD-21857

E-TABM-86

E-GEOD-29803

E-GEOD-40427

E-GEOD-33212

E-GEOD-42205

E-GEOD-40557

E-GEOD-39439

E-GEOD-35049

E-GEOD-35822

E-GEOD-41093

E-GEOD-41940

E-GEOD-41938

E-GEOD-26223

E-MTAB-996

Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields

http://www.ncbi.nlm.nih.gov/pubmed/22331529
http://onlinelibrary.wiley.com/doi/10.1002/bem.21709/full

Affymetrix E. coli Genome 2.0 Array

GSE35371

E-GEOD-35371

in process

JD
http://expression.porteco.org/MicroArray/data/E-GEOD-35371.idf.txt http://expression.porteco.org/MicroArray/data/E-GEOD-35371.sdrf.txt
needs c3-c4

Transcript profiling/Magnetic field

Evolution of gene expression during long term coexistence in a bacterial evolution experiment

http://www.ncbi.nlm.nih.gov/pubmed/22645336
http://www.pnas.org/content/109/24/9487.long

Affymetrix E. coli Genome 2.0 Array

GSE30639

E-GEOD-30639

in process

JD
http://expression.porteco.org/MicroArray/data/E-GEOD-35371.idf.txt
http://expression.porteco.org/MicroArray/data/E-GEOD-35371.sdrf.txt
needs c3-c4

evolution/chemostat

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