PMID:19409082: Difference between revisions
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| | !align=left |Citation | ||
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'''No author listed''' (2009) MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations. ''Genome Biol.'' '''10''':R46 | |||
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| | !align=left |Abstract | ||
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Valuable binding-site annotation data are stored in databases. However, several types of errors can, and do, occur in the process of manually incorporating annotation data from the scientific literature into these databases. Here, we introduce MotifAdjuster http://dig.ipk-gatersleben.de/MotifAdjuster.html, a tool that helps to detect these errors, and we demonstrate its efficacy on public data sets. | |||
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!align=left |Links | |||
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19409082 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718512 PMC2718512] | |||
Online version:[http://dx.doi.org/10.1186/gb-2009-10-5-r46 10.1186/gb-2009-10-5-r46] | Online version:[http://dx.doi.org/10.1186/gb-2009-10-5-r46 10.1186/gb-2009-10-5-r46] | ||
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!align=left |Keywords | |||
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Algorithms; Binding Sites; Computational Biology; DNA-Binding Proteins/chemistry; DNA-Binding Proteins/metabolism; Databases, Protein; Escherichia coli/chemistry; Escherichia coli/genetics; Escherichia coli/metabolism; Escherichia coli Proteins/chemistry; Escherichia coli Proteins/metabolism; Transcription Factors/chemistry; Transcription Factors/metabolism | |||
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==Significance {{HelpIcon|Help:Literature}} == | ==Significance {{HelpIcon|Help:Literature}} == | ||
{{LitSignificance}} | {{LitSignificance}} | ||
Revision as of 19:06, 1 September 2013
| Citation |
No author listed (2009) MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations. Genome Biol. 10:R46 |
|---|---|
| Abstract |
Valuable binding-site annotation data are stored in databases. However, several types of errors can, and do, occur in the process of manually incorporating annotation data from the scientific literature into these databases. Here, we introduce MotifAdjuster http://dig.ipk-gatersleben.de/MotifAdjuster.html, a tool that helps to detect these errors, and we demonstrate its efficacy on public data sets. |
| Links |
PubMed PMC2718512 Online version:10.1186/gb-2009-10-5-r46 |
| Keywords |
Algorithms; Binding Sites; Computational Biology; DNA-Binding Proteins/chemistry; DNA-Binding Proteins/metabolism; Databases, Protein; Escherichia coli/chemistry; Escherichia coli/genetics; Escherichia coli/metabolism; Escherichia coli Proteins/chemistry; Escherichia coli Proteins/metabolism; Transcription Factors/chemistry; Transcription Factors/metabolism |
| edit table |
Significance
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Useful Materials and Methods
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Annotations
| Gene product | Qualifier | GO ID | GO term name | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
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EcoliWiki Links
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See also
References
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