yliF:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0824, b0834, JW0818''<ref name='LIB:Riley_2006'/>
''ECK0824, b0834, JW0818''<ref name='LIB:Riley_2006'/>, JW0818''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B0834<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YliF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B0834<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YliF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0824, JW0818, b0834''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=yliF&s=search PortEco search(yliF)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=yliF&loc=MG1655:874558..875886,W3110:875757..877085,DH10B:928486..929814,REL606:867887..869215,BW2952:777526..778854 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=777526&end=778854&gene=yliF&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yliF+AND+escherichia+coli Pubmed(yliF)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yliF Textpresso(yliF)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yliF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6434]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003034&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yliF&loc=MG1655%3A874558..875886,W3110%3A875757..877085,DH10B%3A928486..929814,REL606%3A867887..869215,BW2952%3A777526..778854]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=777526&end=778854&gene=yliF&aa=msrinkfvltvsllifimisavacgiytqmvkervyslkqsvidtafavaniaeyrrsvaidlintlnpteeqllvglrtayadsvspsylydvgpylissdeciqvkefeknycadimqvvkyrhvkntgfisfdgktfvyylypvthnrslifllglerfsllskslamdsenlmfslfkngkpvtgdeynaknaiftvseamehfaylptglyvfaykkdvylrvctliiffaalvavisgasclylvrrvinrgivekeaiinnhfervldgglffsaadvkklysmynsaflddltkamgrksfdedlkalpekggylclfdvdkfknindtfghllgdevlmkvvkilksqipvdkgkvyrfggdefaviytggtleellsilkeivhfqvgsinlstsigvahsnecptverlkmladerlykskkngraqiswq]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yliF+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yliF]]&nbsp;&nbsp;


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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yliF

Gene Synonym(s)

ECK0824, b0834, JW0818[1], JW0818

Product Desc.

conserved protein[2]; putative lipoprotein[3]

Probable diguanylate cyclase, function unknown; possible lipoprotein[4]

Product Synonyms(s)

predicted diguanylate cyclase[1], B0834[2][1], YliF[2][1] , ECK0824, JW0818, b0834

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yliE[2]

Regulation/Activity
Quick Links



        

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Notes

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YliF has a C-terminal diguanylate cyclase GGDEF domain. No N-domain homologs to check for Cys conservation. First 23 aa are predicted to be a type II signal peptide. YliEF may constitute a cyclic-di-GMP synthesis/degradation module.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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