yhdJ:Quickview: Difference between revisions
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3249, b3262, JW5543, ccrM''<ref name='LIB:Riley_2006'/> | ''ECK3249, b3262, JW5543, ccrM''<ref name='LIB:Riley_2006'/>, ccrM'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, B3262<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CcrM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''predicted methyltransferase<ref name='LIB:Riley_2006'/>, B3262<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CcrM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ccrM, ECK3249, JW5543, b3262'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://porteco.org/AjaxSearch.jsp?searchString=yhdJ&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yhdJ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11498]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001454&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yhdJ&loc=MG1655%3A3409675..3410559,W3110%3A3411508..3412392,REL606%3A3339544..3340428,DH10B%3A3507420..3508304,BW2952%3A3296823..3297707]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3296823&end=3297707&gene=yhdJ&aa=mtmrtgceptrfgneaktiihgdalaelkkipaesvdlifadppynigknfdglieawkedlfidwlfeviaechrvlkkqgsmyimnstenmpfidlqcrklftiksrivwsydssgvqakkhygsmyepilmmvkdaknytfngdailveaktgsqralidyrknppqpynhqkvpgnvwdfprvrylmdeyenhptqkpeallkriilassnpgdivldpfagsfttgavaiasgrkfigieinseyikmglrrldvashysaeelakvkkrktgnlskrsrlsevdpdlitk]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhdJ+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yhdJ]] | ||
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Latest revision as of 21:41, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
yhdJ |
|---|---|
| Gene Synonym(s) |
ECK3249, b3262, JW5543, ccrM[1], ccrM |
| Product Desc. |
predicted methyltransferase[2]; DNA adenine methyltransferase[3] DNA adenine methyltransferase, SAM-dependent[4] |
| Product Synonyms(s) |
predicted methyltransferase[1], B3262[2][1], YhdJ[2][1], CcrM[2][1] , ccrM, ECK3249, JW5543, b3262 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
In vitro DNA adenine methyltransferase activity has been demonstrated for YhdJ; overexpression of YhdJ leads to protection of chromosomal DNA from NsiI digestion, but DNA from wild type cells is not protected (Broadbent (2007). DNA from a DNA methyltransferase deficient strain (dam-, dcm-, EcoK-) does not react with anti-N6-methylA or anti-N4-methylC antibodies when YhdJ is expressed from the pBR322 Tet promoter; the yhdJ-containing pBR322 derivative was not resistant to a variety of restriction (personal communication: R. Vaisvila, S. Stickel and R.J. Roberts, unpublished results, April, 2006). The Kossykh (2004) report describing yhdJ as ccrM, an adenine methyltransferase, has been retracted.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.