yhcA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3205, b3215, JW3182''<ref name='LIB:Riley_2006'/>
''ECK3205, b3215, JW3182''<ref name='LIB:Riley_2006'/>, JW3182''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted periplasmic chaperone protein<ref name='LIB:Riley_2006'/>, B3215<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted periplasmic chaperone protein<ref name='LIB:Riley_2006'/>, B3215<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3205, JW3182, b3215''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=yhcA&s=search PortEco search(yhcA)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=yhcA&loc=MG1655:3360134..3360808,W3110:3361967..3362641,DH10B:3457879..3458553,BW2952:3247282..3247956 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3247282&end=3247956&gene=yhcA&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhcA+AND+escherichia+coli Pubmed(yhcA)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yhcA Textpresso(yhcA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yhcA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11515]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001470&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yhcA&loc=MG1655%3A3360134..3360808,W3110%3A3361967..3362641,DH10B%3A3457879..3458553,BW2952%3A3247282..3247956]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3247282&end=3247956&gene=yhcA&aa=mlrhitftvfittsmntlatgmvpetsvllvdekrgeasinikntddhpsllyttivdlpesnksirliptqpvirveagqvqqvrfllqatvplqseelkrvtfegippkddkssrvtvsirqdlpvlihpaslpeeretwkflewrkngdqieisnpsnyvvrmtlqfktlpsgktgainktyflphtstttaltnatdtkvefypasrygyrgnkyvtdlk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhcA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yhcA]]&nbsp;&nbsp;


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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yhcA

Gene Synonym(s)

ECK3205, b3215, JW3182[1], JW3182

Product Desc.

predicted periplasmic chaperone protein[2][3]

Required for swarming phenotype, function unknown; putative periplasmic pilus chaperone[4]

Product Synonyms(s)

predicted periplasmic chaperone protein[1], B3215[2][1], YhcA[2][1] , ECK3205, JW3182, b3215

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yhcA[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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YhcA has Ig-like domains: pfam PF00345 aligns to N-terminal residues 21-136, and pfam PF02753 aligns to C-terminal residues 139-220. First 19 aa are a predicted type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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