tbpA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch
touch
 
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{|  id="S49b02641e09dd"  class=" tableEdit New_Quickview_Table"   
{|  id="S49b02641e09dd"  class=" tableEdit New_Quickview_Table"   


Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK0069, b0068, JW0067, sfuA, thiB, yabL''<ref name='LIB:Riley_2006'/>
''ECK0069, b0068, JW0067, sfuA, thiB, yabL''<ref name='LIB:Riley_2006'/>, tbpA, yabL''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 45: Line 45:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
thiamin transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B0068<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfuA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''thiamin transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B0068<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfuA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0069, JW0067, sfuA, tbpA, yabL, b0068''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 65: Line 65:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://porteco.org/AjaxSearch.jsp?searchString=tbpA&s=search PortEco search(tbpA)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=tbpA&loc=MG1655:75480..74497,W3110:75480..74497 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=75480&end=74497&gene=tbpA&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tbpA+AND+escherichia+coli Pubmed(tbpA)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tbpA Textpresso(tbpA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=tbpA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11574]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001526&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=tbpA&loc=MG1655%3A75480..74497,W3110%3A75480..74497]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=75480&end=74497&gene=tbpA&aa=mlkkclpllllctapvfakpvltvytydsfaadwgpgpvvkkafeadcncelklvaledgvsllnrlrmegknskadvvlgldnnlldaasktglfaksgvaadavnvpggwnndtfvpfdygyfafvydknklknppqslkelvesdqnwrviyqdprtstpglglllwmqkvygddapqawqklakktvtvtkgwseayglflkgesdlvlsyttspayhileekkdnyaaanfseghylqvevaartaaskqpelaqkflqfmvspafqnaiptgnwmypvanvtlpagfekltkpattleftpaevaaqrqawisewqravsr]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tbpA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tbpA]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:45, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

tbpA

Gene Synonym(s)

ECK0069, b0068, JW0067, sfuA, thiB, yabL[1], tbpA, yabL

Product Desc.

SfuA[2][3];

Component of thiamin ABC transporter[2][3]

Periplasmic thiamin binding protein; monomeric[4]

Product Synonyms(s)

thiamin transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0068[2][1], YabL[2][1], SfuA[2][1], ThiB[2][1], TbpA[2][1] , ECK0069, JW0067, sfuA, tbpA, yabL, b0068

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): thiQ[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


tbpA-thiPQ operon expression is controlled by a thiamine pyrophosphate (TPP) responsive riboswitch in the 5' UTR. This THI element has been reported in intergenic sRNA searches as sroA/tpe79. The tbpA riboswitch is the target for the antibiotic pyrithiamine. The corrected U00096.2 sequence revises the sequence of the TbpA signal peptide, previous thought to be 14 aa.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=tbpA:Quickview&oldid=1395882"