sfmA:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0523, b0530, JW0519''<ref name='LIB:Riley_2006'/>
''ECK0523, b0530, JW0519''<ref name='LIB:Riley_2006'/>, fimA, JW0519''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted fimbrial-like adhesin protein<ref name='LIB:Riley_2006'/>, B0530<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted fimbrial-like adhesin protein<ref name='LIB:Riley_2006'/>, B0530<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0523, fimA, JW0519, b0530''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=sfmA&s=search PortEco search(sfmA)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=sfmA&loc=MG1655:557435..557977,W3110:557435..557977,DH10B:496767..497309,REL606:530320..530862,BW2952:460195..460737 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=460195&end=460737&gene=sfmA&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sfmA+AND+escherichia+coli Pubmed(sfmA)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sfmA Textpresso(sfmA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sfmA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6290]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002898&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sfmA&loc=MG1655%3A557435..557977,W3110%3A557435..557977,DH10B%3A496767..497309,REL606%3A530320..530862,BW2952%3A460195..460737]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=460195&end=460737&gene=sfmA&aa=mesineiegiymklrfissalaaalfaatgsyaavvdggtihfegelvnaacsvntdsadqvvtlgqyrtdifnavgntsalipftiqlndcdpvvaanaavafsgqadaindnllaiasstntttatgvgieildntsailkpdgnsfstnqnlipgtnvlhfsarykgtgtsasagqanadatfimrye]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sfmA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sfmA]]&nbsp;&nbsp;


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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

sfmA

Gene Synonym(s)

ECK0523, b0530, JW0519[1], fimA, JW0519

Product Desc.

putative fimbrial-like protein[2][3]

Function unknown, FimA homolog[4]

Product Synonyms(s)

predicted fimbrial-like adhesin protein[1], B0530[2][1], SfmA[2][1] , ECK0523, fimA, JW0519, b0530

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): sfmA[2]

Regulation/Activity
Quick Links



        

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Notes

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Originally identified as a Salmonella fimbriae gene homolog. One of 25 FimA homologs in EcoGene. First 23 aa are predicted to be a type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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