rlmH:Quickview: Difference between revisions
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0629, b0636, JW0631'', ybeA<ref name='LIB:Riley_2006'/> | ''ECK0629, b0636, JW0631'', ybeA<ref name='LIB:Riley_2006'/>, JW0631, ybeA'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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conserved protein<ref name='LIB:Riley_2006'/>, B0636<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''conserved protein<ref name='LIB:Riley_2006'/>, B0636<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0629, JW0631, ybeA, b0636'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://porteco.org/AjaxSearch.jsp?searchString=ybeA&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybeA&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybeA&loc=MG1655%3A667938..667471,W3110%3A669137..668670,DH10B%3A607270..606803,DH10B%3A720530..720063,BW2952%3A570231..570698]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=570231&end=570698&gene=ybeA&aa=mklqlvavgtkmpdwvqtgfteylrrfpkdmpfelieipagkrgknadikrildkegeqmlaaagknrivtldipgkpwdtpqlaaelerwkldgrdvslliggpeglspackaaaeqswslsaltlphplvrvlvaeslyrawsittnhpyhre]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybeA+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybeA]] | ||
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Latest revision as of 21:44, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
rlmH |
|---|---|
| Gene Synonym(s) |
ECK0629, b0636, JW0631, ybeA[1], JW0631, ybeA |
| Product Desc. |
conserved protein[2][3]; Component of conserved protein[3]. Sequence similarity indicates rlmH is an S-adenosylmethionine-dependent (SPOUT) methyltransferase [4]. Inactivation of the rlmH gene (Keio collection knockout [5]) leads to loss of methylation at nucleotide Psi1915 in 23S rRNA [4]. Computational docking suggests that a YbeA methyltransferase homodimer fits comfortably into the ribosomal A site without encroaching into the P site [4]. Purta et al. suggest that a more suitable designation for the SPOUT-superfamily member YbeA would be the rRNA large subunit methyltransferase RlmH, consistent with the terminology used for the other rRNA methyltransferase characterized in E. coli (see also Ofengand and Del Campo, 2004 [6][7], and Andersen and Douthwaite, 2006 [8]. Putative methyltransferase, function unknown[9] |
| Product Synonyms(s) |
conserved protein[1], B0636[2][1], YbeA[2][1] , ECK0629, JW0631, ybeA, b0636 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
AFMB Structural Genomics target No. 125 (http://afmb.cnrs-mrs.fr/article171.html). Structural similarity to known SAM-dependent SPOUT family methyltransferases.[9]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 Purta, E et al. (2008) YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA. RNA 14 2234-44 PubMed
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedLIB:Neidhardt et al. 1996 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedOfengand, J. and Del Campo, M 2004. Modified nucleotides of Escherichia coli ribosomal RNA. In EcoSal—Escherichia coli and Salmonella: Cellular and molecular biology (ed. R. Curtiss). ASM Press, Washington, DC. - ↑ Andersen, NM & Douthwaite, S (2006) YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. J. Mol. Biol. 359 777-86 PubMed
- ↑ 9.0 9.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.