patA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3063, b3073, JW5510, oat, pat, patA'', ygjG<ref name='LIB:Riley_2006'/>
''ECK3063, b3073, JW5510, oat, pat, patA'', ygjG<ref name='LIB:Riley_2006'/>, ygjG''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3073<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3073<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3063, JW5510, ygjG, b3073''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=ygjG&s=search PortEco search(ygjG)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=ygjG&loc=MG1655:3217489..3218895,W3110:3218123..3219529,DH10B:3315234..3316640,BW2952:3104664..3106043 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3104664&end=3106043&gene=ygjG&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygjG+AND+escherichia+coli Pubmed(ygjG)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygjG Textpresso(ygjG)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygjG&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygjG&loc=MG1655%3A3217489..3218895,W3110%3A3218123..3219529,DH10B%3A3315234..3316640,BW2952%3A3104664..3106043]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3104664&end=3106043&gene=ygjG&aa=mitefvfipifaiaagvaqslqylnryhvireppehilnrlpssasalacsahalnliekrtldheemkalnrevieyfkehvnpgfleyrksvtaggdygavewqagslntlvdtqgqefidclggfgifnvghrnpvvvsavqnqlakqplhsqelldplramlaktlaaltpgklkysffcnsgtesveaalklakayqsprgkftfiatsgafhgkslgalsatakstfrkpfmpllpgfrhvpfgnieamrtalneckktgddvaavilepiqgeggvilpppgyltavrklcdefgalmildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatiateevfsvlfdnpflhtttfggnplacaaalatinvlleqnlpaqaeqkgdmlldgfrqlareypdlvqeargkgmlmaiefvdneigynfasemfrqrvlvagtlnnaktirieppltltieqcelvikaarkalaamrvsveea]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygjG+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygjG]]&nbsp;&nbsp;


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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

patA

Gene Synonym(s)

ECK3063, b3073, JW5510, oat, pat, patA, ygjG[1], ygjG

Product Desc.

G7596[2][3]

Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent[4]

Product Synonyms(s)

putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent[1], B3073[2][1], YgjG[2][1], Oat[2][1], Pat[2][1] , ECK3063, JW5510, ygjG, b3073

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): patA[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


AFMB Structural Genomics target No. 29 (http://afmb.cnrs-mrs.fr/article171.html). The pat gene, mapped to 89.1 minutes, was thought to encode this activity. No ORF in the metB-argH region is a candidate. perhaps the pat mutation is a ygjG regulatory mutation and ygjG is the pat structural gene. YgjG also transaminates cadaverine and spermidine.YdcW couples with YgjG to convert putrescine to gamma-aminobutyric acid.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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