casA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2755, b2760, JW2730'', ygcL<ref name='LIB:Riley_2006'/>
''ECK2755, b2760, JW2730'', ygcL<ref name='LIB:Riley_2006'/>, cse1, JW2730, ygcL''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein<ref name='LIB:Riley_2006'/>, B2760<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted protein<ref name='LIB:Riley_2006'/>, B2760<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , cse1, ECK2755, JW2730, ygcL, b2760''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=ygcL&s=search PortEco search(ygcL)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=ygcL&loc=MG1655:2882160..2880652,W3110:2882794..2881286,DH10B:2974702..2973194,BW2952:2766464..2767972 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2766464&end=2767972&gene=ygcL&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygcL+AND+escherichia+coli Pubmed(ygcL)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygcL Textpresso(ygcL)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygcL&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygcL&loc=MG1655%3A2882160..2880652,W3110%3A2882794..2881286,DH10B%3A2974702..2973194,BW2952%3A2766464..2767972]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2766464&end=2767972&gene=ygcL&aa=mnllidnwipvrprnggkvqiinlqslycsrdqwrlslprddmelaalallvcigqiiapakddvefrhrimnpltedefqqliapwidmfylnhaehpfmqtkgvkandvtpmekllagvsgatncafvnqpgqgealcggctaialfnqanqapgfgggfksglrggtpvttfvrgidlrstvllnvltlprlqkqfpneshtenqptwikpiksnesipassigfvrglfwqpahielcdpigigkcsccgqesnlrytgflkekftftvnglwphphspclvtvkkgeveekflafttsapswtqisrvvvdkiiqnengnrvaavvnqfrniapqsplelimggyrnnqasilerrhdvlmfnqgwqqygnvineivtvglgyktalrkalytfaegfknkdfkgagvsvhetaerhfyrqsellipdvlanvnfsqadeviadlrdklhqlcemlfnqsvapyahhpklistlalaratlykhlrelkpqggpsng]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygcL+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygcL]]&nbsp;&nbsp;


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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

casA

Gene Synonym(s)

ECK2755, b2760, JW2730, ygcL[1], cse1, JW2730, ygcL

Product Desc.

predicted protein[2][3]

Function unknown; baeSR regulon; homologous to human TRRAP protein, phosphatidylinositol kinases and DNA-dependent protein kinases[4]

Product Synonyms(s)

predicted protein[1], B2760[2][1], YgcL[2][1] , cse1, ECK2755, JW2730, ygcL, b2760

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygbF[2]

Regulation/Activity

In E. coli K12 transcription of casA is cryptic through silencing by H-NS [5].

Quick Links



        

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Notes

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casA, as the other Cascade genes, is transcribed from a single promoter, which is silenced by H-NS [5].




References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Pul, U et al. (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol. 75 1495-512 PubMed
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