nrdD:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4233, b4238, JW4197''<ref name='LIB:Riley_2006'/>
''ECK4233, b4238, JW4197''<ref name='LIB:Riley_2006'/>, JW4197''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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anaerobic ribonucleoside-triphosphate reductase<ref name='LIB:Riley_2006'/>, B4238<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''anaerobic ribonucleoside-triphosphate reductase<ref name='LIB:Riley_2006'/>, B4238<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4233, JW4197, b4238''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=nrdD&s=search PortEco search(nrdD)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=nrdD&loc=MG1655:4460683..4458545,W3110:4467340..4465202,REL606:4445937..4443799,DH10B:4562491..4560353,BW2952:4397280..4399418 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4397280&end=4399418&gene=nrdD&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdD+AND+escherichia+coli Pubmed(nrdD)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nrdD Textpresso(nrdD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nrdD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11417]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001382&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nrdD&loc=MG1655%3A4460683..4458545,W3110%3A4467340..4465202,REL606%3A4445937..4443799,DH10B%3A4562491..4560353,BW2952%3A4397280..4399418]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4397280&end=4399418&gene=nrdD&aa=mtphvmkrdgckvpfkserikeailraakaaevddadycatvaavvseqmqgrnqvdineiqtavenqlmsgpykqlarayieyrhdrdierekrgrlnqeirglveqtnasllnenankdskviptqrdllagivakhyarqhllprdvvqahergdihyhdldyspffpmfncmlidlkgmltqgfkmgnaeieppksistatavtaqiiaqvashiyggttinridevlapfvtasynkhrktaeewnipdaegyansrtikecydafqsleyevntlhtangqtpfvtfgfglgtswesrliqesilrnriaglgknrktavfpklvfairdglnhkkgdpnydikqlalecaskrmypdilnydqvvkvtgsfktpmgcrsflgvwenengeqihdgrnnlgvislnlprialeakgdeatfwkllderlvlarkalmtriarlegvkarvapilymegacgvrlnadddvseifkngrasislgyigihetinalfggehvydneqlrakgiaiverlrqavdqwkeetgygfslystpsenlcdrfcrldtaefgvvpgvtdkgyytnsfhldvekkvnpydkidfeapypplanggficygeypniqhnlkaledvwdysyqhvpyygtntpidecyecgftgefectskgftcpkcgnhdasrvsvtrrvcgylgspdarpfnagkqeevkrrvkhlgngqig]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nrdD]]&nbsp;&nbsp;


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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nrdD

Gene Synonym(s)

ECK4233, b4238, JW4197[1], JW4197

Product Desc.

ribonucleoside-triphosphate reductase[2][3];

Component of ribonucleoside-triphosphate reductase[2][3]; anaerobic nucleoside-triphosphate reductase activating system[2][3]

Ribonucleoside triphosphate reductase, class III, anaerobic[4]

Product Synonyms(s)

anaerobic ribonucleoside-triphosphate reductase[1], B4238[2][1], NrdD[2][1] , ECK4233, JW4197, b4238

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nrdDG[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Activated NrdD is predicted to be cleaved by oxygen at the Gly681 radical, dropping the last 31 aa. Requires AdoMet for oxidation of the iron-sulfur center and glycine radical formation. FNR regulon. Binds TrxA (Kumar, 2004).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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