hokA:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3544, b4455, JW3526, yiaZ''<ref name='LIB:Riley_2006'/>
''ECK3544, b4455, JW3526, yiaZ''<ref name='LIB:Riley_2006'/>, yiaZ''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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toxic polypeptide, small<ref name='LIB:Riley_2006'/>, HokA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4455<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''toxic polypeptide, small<ref name='LIB:Riley_2006'/>, HokA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4455<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3544, JW3526, yiaZ, b4455''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=hokA&s=search PortEco search(hokA)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=hokA&loc=MG1655:3718623..3718471,W3110:3919815..3919967,DH10B:3816200..3816048,REL606:3651058..3650906,BW2952:3606797..3606949 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3606797&end=3606949&gene=hokA&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hokA+AND+escherichia+coli Pubmed(hokA)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hokA Textpresso(hokA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hokA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-9613]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002664&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hokA&loc=MG1655%3A3718623..3718471,W3110%3A3919815..3919967,DH10B%3A3816200..3816048,REL606%3A3651058..3650906,BW2952%3A3606797..3606949]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3606797&end=3606949&gene=hokA&aa=mpqkyrllslivicftllfftwmirdslcelhikqesyelaaflacklke]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hokA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hokA]]&nbsp;&nbsp;


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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hokA

Gene Synonym(s)

ECK3544, b4455, JW3526, yiaZ[1], yiaZ

Product Desc.

small toxic membrane polypeptide[2][3]

Small toxic membrane polypeptide; homologous to plasmid-encoded plasmid stabilization toxins regulated by antisense RNA; functional relevance of chromosomal homologs is unknown[4]

Product Synonyms(s)

toxic polypeptide, small[1], HokA[2][1], YiaZ[2][1], B4455[2][1] , ECK3544, JW3526, yiaZ, b4455

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hokA[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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The hokA transcript is interrupted by IS150, interrupting and deleting part of the mokA and sokA regulatory genes.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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