frmR:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0354, b0357, JW0348, yaiN''<ref name='LIB:Riley_2006'/>
''ECK0354, b0357, JW0348, yaiN''<ref name='LIB:Riley_2006'/>, yaiN''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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regulator protein that represses frmRAB operon<ref name='LIB:Riley_2006'/>, B0357<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrmR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''regulator protein that represses frmRAB operon<ref name='LIB:Riley_2006'/>, B0357<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrmR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0354, JW0348, yaiN, b0357''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=frmR&s=search PortEco search(frmR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=frmR&loc=MG1655:379105..378830,W3110:379105..378830,DH10B:318436..318161,REL606:352238..351963,BW2952:281589..281864 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=281589&end=281864&gene=frmR&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=frmR+AND+escherichia+coli Pubmed(frmR)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=frmR Textpresso(frmR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=frmR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6209]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002823&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=frmR&loc=MG1655%3A379105..378830,W3110%3A379105..378830,DH10B%3A318436..318161,REL606%3A352238..351963,BW2952%3A281589..281864]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=281589&end=281864&gene=frmR&aa=mqmmrcempstpeekkkvltrvrrirgqidalerslegdaecrailqqiaavrgaanglmaevleshiretfdrndcysrevsqsvddtielvraylk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=frmR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=frmR]]&nbsp;&nbsp;


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Latest revision as of 21:50, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

frmR

Gene Synonym(s)

ECK0354, b0357, JW0348, yaiN[1], yaiN

Product Desc.

regulator protein[2][3]

Negative regulator of the frmRAB operon[4]

Product Synonyms(s)

regulator protein that represses frmRAB operon[1], B0357[2][1], YaiN[2][1], FrmR[2][1] , ECK0354, JW0348, yaiN, b0357

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): frmB[2]

Regulation/Activity
Quick Links



        

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Notes

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The frmRAB operon is negatively regulated by frmR, is induced by formaldehyde, and probably degrades formaldehyde. An amber suppressor allows readthrough of frmR, adding 7 aa, which inactivates FrmR, causing stimulation of frmRAB transcription. frmR and rcnR are paralogs.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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