dctR:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yhiF, ECK3491, b3507, JW3475''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yhiF, ECK3491, b3507, JW3475''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW3475''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted DNA-binding ranscriptional regulator<ref name='LIB:Riley_2006'/>, B3507<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DctR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhiF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted DNA-binding ranscriptional regulator<ref name='LIB:Riley_2006'/>, B3507<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DctR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhiF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3491, JW3475, yhiF, b3507''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=dctR&s=search PortEco search(dctR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=dctR&loc=MG1655:3652706..3653236,W3110:3985732..3985202,BW2952:3541200..3541730 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3541200&end=3541730&gene=dctR&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dctR+AND+escherichia+coli Pubmed(dctR)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dctR Textpresso(dctR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dctR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11889]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001819&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dctR&loc=MG1655%3A3652706..3653236,W3110%3A3985732..3985202,BW2952%3A3541200..3541730]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3541200&end=3541730&gene=dctR&aa=mfliitrdtmfftamknilskgnvvhiqneeeidvmlhqnafviidtlmnnvfhsnfltqierlkpvhviifspfnikrclgkvpvtfvprtitiidfvalingsycsvpeaavslsrkqhqvlscianqmttedileklkislktfychkhnimmilnlkrinelvrhqhidylv]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dctR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dctR]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dctR

Gene Synonym(s)

yhiF, ECK3491, b3507, JW3475[1][2], JW3475

Product Desc.

protein involved in metabolism of C4-dicarboxylates[2]; predicted DNA-binding transcriptional regulator[3]

Probable repressor of dctA dicarboxylate transporter gene[4]

Product Synonyms(s)

predicted DNA-binding ranscriptional regulator[1], B3507[2][1], DctR[2][1], YhiF[2][1] , ECK3491, JW3475, yhiF, b3507

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yhiF[2]

Regulation/Activity
Quick Links



        

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Notes

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DctR is in the EvgAS regulon. Mutation reverses succinate growth defect of an atp operon deletion, as does a DctA overproducer. Overproduced DctR blocks growth on succinate, presumably by repressing dctA. Overexpression of DctR causes filamentous biofilm formation. DctR is a member of the LuxR family of regulatory proteins and is homologous to the DctR response regulator of R. capsulatus. DctR is possibly involved in the regulation of type III secretion systems in enterohemorrhagic E. coli O157:H7.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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