PMID:15215471: Difference between revisions

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<span style = 'font-size: large'> '''Dong, X, Stothard, P, Forsythe, IJ and Wishart, DS'''  (2004) PlasMapper: a web server for drawing and auto-annotating plasmid maps.''Nucleic Acids Res.'' '''32''':W660-4</span>
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|{{TableHeadingColor}} |'''Abstract''' || <protect>PlasMapper is a comprehensive web server that automatically generates and annotates high-quality circular plasmid maps. Taking only the plasmid/vector DNA sequence as input, PlasMapper uses sequence pattern matching and BLAST alignment to automatically identify and label common promoters, terminators, cloning sites, restriction sites, reporter genes, affinity tags, selectable marker genes, replication origins and open reading frames. PlasMapper then presents the identified features in textual form and as high-resolution, multicolored graphical output. The appearance and contents of the output can be customized in numerous ways using several supplied options. Further, PlasMapper images can be rendered in both rasterized (PNG and JPG) and vector graphics (SVG) formats to accommodate a variety of user needs or preferences. The images and textual output are of sufficient quality that they may be used directly in publications or presentations. The PlasMapper web server is freely accessible at http://wishart.biology.ualberta.ca/PlasMapper.</protect>
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'''No author listed''' (2004) PlasMapper: a web server for drawing and auto-annotating plasmid maps. ''Nucleic Acids Res.'' '''32''':W660-4
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!align=left  |Abstract
*  [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15215471 PubMed]
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PlasMapper is a comprehensive web server that automatically generates and annotates high-quality circular plasmid maps. Taking only the plasmid/vector DNA sequence as input, PlasMapper uses sequence pattern matching and BLAST alignment to automatically identify and label common promoters, terminators, cloning sites, restriction sites, reporter genes, affinity tags, selectable marker genes, replication origins and open reading frames. PlasMapper then presents the identified features in textual form and as high-resolution, multicolored graphical output. The appearance and contents of the output can be customized in numerous ways using several supplied options. Further, PlasMapper images can be rendered in both rasterized (PNG and JPG) and vector graphics (SVG) formats to accommodate a variety of user needs or preferences. The images and textual output are of sufficient quality that they may be used directly in publications or presentations. The PlasMapper web server is freely accessible at http://wishart.biology.ualberta.ca/PlasMapper.
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!align=left  |Links
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15215471 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441548 PMC441548]
Online version:[http://dx.doi.org/10.1093/nar/gkh410 10.1093/nar/gkh410]
Online version:[http://dx.doi.org/10.1093/nar/gkh410 10.1093/nar/gkh410]
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!align=left  |Keywords
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Chromosome Mapping; Computer Graphics; Internet; Plasmids/chemistry; Plasmids/genetics; Restriction Mapping; Sequence Analysis, DNA; Software; User-Computer Interface
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==Significance {{HelpIcon|Help:Literature}} ==
==Significance {{HelpIcon|Help:Literature}} ==
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{{LitSignificance}}

Revision as of 18:34, 1 September 2013

Citation

No author listed (2004) PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res. 32:W660-4

Abstract

PlasMapper is a comprehensive web server that automatically generates and annotates high-quality circular plasmid maps. Taking only the plasmid/vector DNA sequence as input, PlasMapper uses sequence pattern matching and BLAST alignment to automatically identify and label common promoters, terminators, cloning sites, restriction sites, reporter genes, affinity tags, selectable marker genes, replication origins and open reading frames. PlasMapper then presents the identified features in textual form and as high-resolution, multicolored graphical output. The appearance and contents of the output can be customized in numerous ways using several supplied options. Further, PlasMapper images can be rendered in both rasterized (PNG and JPG) and vector graphics (SVG) formats to accommodate a variety of user needs or preferences. The images and textual output are of sufficient quality that they may be used directly in publications or presentations. The PlasMapper web server is freely accessible at http://wishart.biology.ualberta.ca/PlasMapper.

Links

PubMed PMC441548 Online version:10.1093/nar/gkh410

Keywords

Chromosome Mapping; Computer Graphics; Internet; Plasmids/chemistry; Plasmids/genetics; Restriction Mapping; Sequence Analysis, DNA; Software; User-Computer Interface

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Significance

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Useful Materials and Methods

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Annotations

Gene product Qualifier GO ID GO term name Evidence Code with/from Aspect Notes Status
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