ycgF:Quickview: Difference between revisions
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[http://ecoliwiki.net/tools/display_dna.php?gene=ycgF&loc=MG1655:1214698..1213487,W3110:1217052..1215841,DH10B:1254939..1253728,REL606:1215636..1214425,BW2952:1102208..1103419 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1102208&end=1103419&gene=ycgF&aa=mlttliyrshirddepvkkieemvsianrrnmqsdvtgillfngshffqllegpeeqvkmiyraicqdprhynivellcdyaparrfgkagmelfdlrlherddvlqavfdkgtskfqltyddralqffrtfvlateqstyfeipaedswlfiadgsdkeldscalsptindhfafhpivdplsrriiafeaivqknedspsaiavgqrkdgeiytadlkskalaftmahalelgdkmisinllpmtlvnepdavsfllneikanalvpeqiiveftesevisrfdefaeaikslkaagisvaidhfgagfagllllsrfqpdrikisqelitnvhksgprqaiiqaiikcctsleiqvsamgvatpeewmwlesagiemfqgdlfakaklngipsiawpekk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycgF+AND+escherichia+coli Pubmed(ycgF)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=ycgF Textpresso(ycgF)] | [http://porteco.org/AjaxSearch.jsp?searchString=ycgF&s=search PortEco search(ycgF)] [http://ecoliwiki.net/tools/display_dna.php?gene=ycgF&loc=MG1655:1214698..1213487,W3110:1217052..1215841,DH10B:1254939..1253728,REL606:1215636..1214425,BW2952:1102208..1103419 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1102208&end=1103419&gene=ycgF&aa=mlttliyrshirddepvkkieemvsianrrnmqsdvtgillfngshffqllegpeeqvkmiyraicqdprhynivellcdyaparrfgkagmelfdlrlherddvlqavfdkgtskfqltyddralqffrtfvlateqstyfeipaedswlfiadgsdkeldscalsptindhfafhpivdplsrriiafeaivqknedspsaiavgqrkdgeiytadlkskalaftmahalelgdkmisinllpmtlvnepdavsfllneikanalvpeqiiveftesevisrfdefaeaikslkaagisvaidhfgagfagllllsrfqpdrikisqelitnvhksgprqaiiqaiikcctsleiqvsamgvatpeewmwlesagiemfqgdlfakaklngipsiawpekk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycgF+AND+escherichia+coli Pubmed(ycgF)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=ycgF Textpresso(ycgF)] | ||
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Revision as of 08:37, 27 May 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ycgF |
|---|---|
| Gene Synonym(s) |
ECK1150, b1163, JW1150[1] |
| Product Desc. |
predicted FAD-binding phosphodiesterase[2][3] Putative cyclic-di-GMP phosphodiesterase, function unknown; cold shock gene, binds FAD[4] |
| Product Synonyms(s) |
predicted FAD-binding phosphodiesterase[1], B1163[2][1], YcgF[2][1], Blrp[2][1] |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
PortEco search(ycgF) DNA display Protein display Pubmed(ycgF) Textpresso(ycgF) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The cold-inducibility of ycgF is dependent on the presence of the pnp gene. YcgF has an N-terminal blue light-responsive FAD-binding BLUF domain, and a C-terminal cyclic-di-GMP phosphodiesterase EAL domain.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.