thiM:Quickview: Difference between revisions
touch QV table |
touch QV table |
||
| Line 63: | Line 63: | ||
!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
|| | || | ||
[http://ecoliwiki.net/tools/display_dna.php?gene=thiM&loc=MG1655:2183323..2182535,W3110:2188635..2187847,REL606:2139430..2138642,DH10B:2274331..2273543,BW2952:2075018..2075806 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2075018&end=2075806&gene=thiM&aa=mqvdllgsaqsahalhlfhqhsplvhcmtndvvqtftantllalgaspamvieteeasqfaaiasallinvgtltqpraqamraaveqakssqtpwtldpvavgaldyrrhfchellsfkpaairgnaseimalagianggrgvdttdaaanaipaaqtlaretgaivvvtgemdyvtdghriigihggdplmtkvvgtgcalsavvaaccalpgdtlenvasachwmkqageravarsegpgsfvphfldalwqltqevqa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=thiM+AND+escherichia+coli Pubmed(thiM)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=thiM Textpresso(thiM)] | [http://porteco.org/AjaxSearch.jsp?searchString=thiM&s=search PortEco search(thiM)] [http://ecoliwiki.net/tools/display_dna.php?gene=thiM&loc=MG1655:2183323..2182535,W3110:2188635..2187847,REL606:2139430..2138642,DH10B:2274331..2273543,BW2952:2075018..2075806 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2075018&end=2075806&gene=thiM&aa=mqvdllgsaqsahalhlfhqhsplvhcmtndvvqtftantllalgaspamvieteeasqfaaiasallinvgtltqpraqamraaveqakssqtpwtldpvavgaldyrrhfchellsfkpaairgnaseimalagianggrgvdttdaaanaipaaqtlaretgaivvvtgemdyvtdghriigihggdplmtkvvgtgcalsavvaaccalpgdtlenvasachwmkqageravarsegpgsfvphfldalwqltqevqa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=thiM+AND+escherichia+coli Pubmed(thiM)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=thiM Textpresso(thiM)] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 08:31, 27 May 2011
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
thiM |
|---|---|
| Gene Synonym(s) |
ECK2097, b2104, JW2091[1] |
| Product Desc. |
hydroxyethylthiazole kinase[2][3] Hydroxyethylthiazole kinase[4] |
| Product Synonyms(s) |
hydoxyethylthiazole kinase[1], B2104[2][1], ThiM[2][1], 4-methyl-5-(β-hydroxyethyl)thiazole kinase[2][1], ATP:4-methyl-5-(2-hydroxyethyl)-thiazole 2-phosphotransferase[2][1], THZ kinase[2][1] |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
PortEco search(thiM) DNA display Protein display Pubmed(thiM) Textpresso(thiM) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
thiMD operon expression is controlled by a thiamine pyrophosphate (TPP) responsive riboswitch in the 5' UTR. The thiM riboswitch is the target for the antibiotic pyrithiamine. The PDB links are to the structures of various thiM riboswitch/small molecule complexes: 2GDI, TPP; 2HOJ, TPP/Mn2+; 2HOK, TPP/Ca2+; 2HOL, TPP/Ba2+; 2HOM,TMP; 2HOO, BTP; 2HOP, PT (Serganov, 2006; Edwards, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.