rapA:Quickview: Difference between revisions

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{{Tab On|Quickview|hepA}}{{Tab|Gene|hepA}}{{Tab|Gene Product(s)|hepA}}{{Tab|Expression|hepA}}{{Tab|Evolution|hepA}}{{Tab|On One Page|hepA}}{{TabsBottom}}
{{Tab On|Quickview|rapA}}{{Tab|Gene|rapA}}{{Tab|Gene Product(s)|rapA}}{{Tab|Expression|rapA}}{{Tab|Evolution|rapA}}{{Tab|On One Page|rapA}}{{TabsBottom}}
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''hepA''  
''rapA''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0060, b0059, JW0058, rapA, yabA''<ref name='LIB:Riley_2006'/>
''ECK0060, b0059, JW0058, rapA, yabA''<ref name='LIB:Riley_2006'/>, hepA product
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:hepA|hepA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rapA|rapA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=hepA&loc=MG1655:63264..60358,W3110:63264..60358,DH10B:62378..60358,REL606:66068..63162 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=66068&end=63162&gene=hepA&aa=mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdtitshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqidrmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevglgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhdaynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieqlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknyrpvadavamllagnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrntrngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdnatwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsiierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrigqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqtegfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamnlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwehplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpvrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksaralidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalrlivvthq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hepA+AND+escherichia+coli Pubmed(hepA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hepA Textpresso(hepA)]
[http://ecoliwiki.net/tools/display_dna.php?gene=rapA&loc=MG1655:63264..60358,W3110:63264..60358,DH10B:62378..60358,REL606:66068..63162 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=66068&end=63162&gene=rapA&aa=mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdtitshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqidrmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevglgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhdaynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieqlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknyrpvadavamllagnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrntrngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdnatwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsiierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrigqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqtegfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamnlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwehplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpvrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksaralidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalrlivvthq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rapA+AND+escherichia+coli Pubmed(rapA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rapA Textpresso(rapA)]


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Revision as of 19:33, 2 March 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rapA

Gene Synonym(s)

ECK0060, b0059, JW0058, rapA, yabA[1], hepA product

Product Desc.

RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor[2][3]

RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase[4]

Product Synonyms(s)

RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)[1], B0059[2][1], YabA[2][1], RapA[2][1], HepA[2][1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rluA[2], rapA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rapA)    Textpresso(rapA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


HepA has sequence similarity to SWI2/SNF2 helicases. hepA is downstream of polB, but is not under lexA control. The mutant phentypes may be indirect since other genes, e.g. yeeZ and aaeA(yhcQ), are downregulated in hepA(rapA) mutants (Lynch, 2007).[4]



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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