PMID:18940859: Difference between revisions

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<span style = 'font-size: large'> '''Walter, MC, Rattei, T, Arnold, R, Güldener, U, Münsterkötter, M, Nenova, K, Kastenmüller, G, Tischler, P, Wölling, A, Volz, A, Pongratz, N, Jost, R, Mewes, HW and Frishman, D''' (2009) PEDANT covers all complete RefSeq genomes.''Nucleic Acids Res.'' '''37''':D408-11</span>
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|{{TableHeadingColor}} |'''Abstract''' || <protect>The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of precalculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.</protect>
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'''No author listed''' (2009) PEDANT covers all complete RefSeq genomes. ''Nucleic Acids Res.'' '''37''':D408-11
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|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18940859 PubMed]<br/>Online version:[http://dx.doi.org/10.1093/nar/gkn749 10.1093/nar/gkn749]
!align=left  |Abstract
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The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of precalculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.
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!align=left  |Links
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18940859 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686588 PMC2686588]
Online version:[http://dx.doi.org/10.1093/nar/gkn749 10.1093/nar/gkn749]
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!align=left  |Keywords
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Databases, Genetic; Genome; Genomics; Internet; Proteins/genetics
 
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==Significance {{HelpIcon|Help:Literature}} ==
==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}
{{LitSignificance}}

Revision as of 19:05, 1 September 2013

Citation

No author listed (2009) PEDANT covers all complete RefSeq genomes. Nucleic Acids Res. 37:D408-11

Abstract

The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of precalculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.

Links

PubMed PMC2686588 Online version:10.1093/nar/gkn749

Keywords

Databases, Genetic; Genome; Genomics; Internet; Proteins/genetics

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Significance

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Useful Materials and Methods

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Annotations

Gene product Qualifier GO ID GO term name Evidence Code with/from Aspect Notes Status
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