dacB:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
<GO_nr />
* GO:0000270 peptidoglycan metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP])
* GO:0007047 cell wall organization ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP])
* GO:0008152 metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008360 regulation of cell shape ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0009253 peptidoglycan catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009254 peptidoglycan turnover ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0010382 cellular cell wall metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016998 cell wall catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0043093 binary fission ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0042493 response to drug ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0003824 catalytic activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004175 endopeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004180 carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0008233 peptidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008658 penicillin binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016787 hydrolase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0030288 outer membrane-bounded periplasmic space ([http://www.geneontology.org/GO.evidence.shtml IMP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype

Revision as of 19:45, 2 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dacB

Gene Synonym(s)

ECK3171, b3182, JW3149, pbp[1]

Product Desc.

EG10202[2][3]

D-alanine D-alanine carboxypeptidase PBP4; penicillin-binding protein 4[4]

Product Synonyms(s)

D-alanyl-D-alanine carboxypeptidase[1], B3182[2][1], DacB[2][1], D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4[2][1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dacB[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dacB)    Textpresso(dacB)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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False positive lipoprotein prediction, verified SPI substrate. Mutant has biofilm defect.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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