zraR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''zraR'' | ''zraR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3996, b4004, JW3968, hydG''<ref name='LIB:Riley_2006'/> | ''ECK3996, b4004, JW3968, hydG''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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ZraR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ZraR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Two component response regulator for zraP; responsive to Zn(2+) and Pb(2+); autoregulated; regulation of Hyd-3 activity is probably due to crosstalk of overexpressed protein<ref name='LIB:EcoGene'/> | Two component response regulator for zraP; responsive to Zn(2+) and Pb(2+); autoregulated; regulation of Hyd-3 activity is probably due to crosstalk of overexpressed protein<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator <ref name='LIB:Riley_2006'/>, sigma54 interaction protein <ref name='LIB:Riley_2006'/>, B4004 <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional regulatory protein HydG-P<SUP>asp</SUP> <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, phospho-HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, modified transcriptional regulatory protein HydG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, phosphorylated transcriptional regulatory protein HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZraR-phosphate <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive DNA-binding transcriptional regulator for zraP expression, response regulator in two-component reguatory system with ZraS <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator <ref name='LIB:Riley_2006'/>, sigma54 interaction protein <ref name='LIB:Riley_2006'/>, B4004 <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional regulatory protein HydG-P<SUP>asp</SUP> <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, phospho-HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, modified transcriptional regulatory protein HydG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, phosphorylated transcriptional regulatory protein HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZraR-phosphate <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive DNA-binding transcriptional regulator for zraP expression, response regulator in two-component reguatory system with ZraS <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:zraSR|zraSR]]<ref name='LIB:EcoCyc10.6'/>, hydHG | transcription unit(s): [[:Category:Txn_unit:zraSR|zraSR]]<ref name='LIB:EcoCyc10.6'/>, hydHG | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=zraR&loc=MG1655:4201343..4202668,W3110:3433361..3432036,REL606:4182905..4184230,DH10B:4301039..4302364 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4301039&end=4302364&gene=zraR&aa=mthdnidilvvdddishctilqallrgwgynvalansgrqaleqvreqvfdlvlcdvrmaemdgiatlkeikalnpaipvlimtayssvetavealktgaldylikpldfdnlqatlekalahthsidaetpavtasqfgmvgkspamqhllseialvapseatvlihgdsgtgkelvaraihassarsekplvtlncaalneslleselfghekgaftgadkrregrfveadggtlfldeigdispmmqvrllraiqerevqrvgsnqiisvdvrliaathrdlaaevnagrfrqdlyyrlnvvaievpslrqrredipllaghflqrfaernrkavkgftpqamdllihydwpgnirelenaveravvlltgeyiserelplaiastpiplgqsqdiqplvevekevilaalektggnkteaarqlgitrktllaklsr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=zraR+AND+escherichia+coli Pubmed(zraR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=zraR Textpresso(zraR)] | |||
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Revision as of 22:49, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
zraR |
|---|---|
| Gene Synonym(s) |
ECK3996, b4004, JW3968, hydG[1] |
| Product Desc. |
ZraR transcriptional activator[2][3] Two component response regulator for zraP; responsive to Zn(2+) and Pb(2+); autoregulated; regulation of Hyd-3 activity is probably due to crosstalk of overexpressed protein[4] |
| Product Synonyms(s) |
fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator [1], sigma54 interaction protein [1], B4004 [2][1], HydG [2][1], transcriptional regulatory protein HydG-Pasp [2][1], phospho-HydG [2][1], modified transcriptional regulatory protein HydG[2][1], phosphorylated transcriptional regulatory protein HydG [2][1], ZraR-phosphate [2][1], positive DNA-binding transcriptional regulator for zraP expression, response regulator in two-component reguatory system with ZraS [2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The N-terminal sequencing of overexpressed protein showed that the fMet is not clipped (Leonhartsberger et al. 2001. However, natural RBS was not used, so it is not included in the Verified set, although this is almost certainly the correct in vivo start site.[4]
References
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.