ytfE:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ytfE'' | ''ytfE'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4205, b4209, JW4167''<ref name='LIB:Riley_2006'/> | ''ECK4205, b4209, JW4167''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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iron metabolism protein<ref name='LIB:EcoCyc10.6'/>; protein involved in repair of stress-damaged iron-sulfur clusters<ref name='LIB:EcoCyc11.1'/> | iron metabolism protein<ref name='LIB:EcoCyc10.6'/>; protein involved in repair of stress-damaged iron-sulfur clusters<ref name='LIB:EcoCyc11.1'/> | ||
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Iron-sulfur cluster repair protein; confers resistance to nitric oxide and hydrogen peroxide; di-iron center<ref name='LIB:EcoGene'/> | Iron-sulfur cluster repair protein; confers resistance to nitric oxide and hydrogen peroxide; di-iron center<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted regulator of cell morphogenesis and cell wall metabolism product<ref name='LIB:Riley_2006'/>, B4209 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YtfE product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted regulator of cell morphogenesis and cell wall metabolism product<ref name='LIB:Riley_2006'/>, B4209 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YtfE product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0006950 response to stress ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
* GO:0030091 protein repair ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ytfE|ytfE]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ytfE|ytfE]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ytfE&loc=MG1655:4430006..4429344,W3110:4436663..4436001,REL606:4416982..4416320,DH10B:4530368..4529706 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4530368&end=4529706&gene=ytfE&aa=mayrdqplgelalsiprasalfrkydmdyccggkqtlaraaarkeldvevieaelaklaeqpiekdwrsaplaeiidhiivryhdrhreqlpelilqatkvervhadkpsvpkgltkyltmlheelsshmmkeeqilfpmikqgmgsqamgpisvmesehdeagellevikhttnnvtpppeacttwkamyngineliddlmdhislennvlfpralage Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ytfE+AND+escherichia+coli Pubmed(ytfE)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ytfE Textpresso(ytfE)] | |||
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Revision as of 22:49, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ytfE |
|---|---|
| Gene Synonym(s) |
ECK4205, b4209, JW4167[1] |
| Product Desc. |
iron metabolism protein[2]; protein involved in repair of stress-damaged iron-sulfur clusters[3] Iron-sulfur cluster repair protein; confers resistance to nitric oxide and hydrogen peroxide; di-iron center[4] |
| Product Synonyms(s) |
predicted regulator of cell morphogenesis and cell wall metabolism product[1], B4209 product[2][1], YtfE product[2][1] |
| Function from GO |
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
ytfE is induced by NO as part of the NsrR regulon. YtfE can regenerate damaged AcnB and FumA in vitro (Justino, 2007). A ytfE mutant grows poorly under anaerobic respiratory conditions and has an increased sensitivity to iron starvation. ytfE is homologous to S. aureus scdA. ytfE expression is increased in fnr and fur mutants, but no obvious Fnr or Fur binding sites were found.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.