yjgH:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''yjgH'' | ''yjgH'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4242, b4248, JW4206''<ref name='LIB:Riley_2006'/> | ''ECK4242, b4248, JW4206''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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hypothetical protein<ref name='LIB:EcoCyc10.6'/>; predicted mRNA endoribonuclease<ref name='LIB:EcoCyc11.1'/> | hypothetical protein<ref name='LIB:EcoCyc10.6'/>; predicted mRNA endoribonuclease<ref name='LIB:EcoCyc11.1'/> | ||
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Function unknown<ref name='LIB:EcoGene'/> | Function unknown<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted mRNA endoribonuclease product<ref name='LIB:Riley_2006'/>, B4248 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjgH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted mRNA endoribonuclease product<ref name='LIB:Riley_2006'/>, B4248 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjgH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yjgH|yjgH]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yjgH|yjgH]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yjgH&loc=MG1655:4471232..4470837,W3110:4477889..4477494,REL606:4456486..4456091,DH10B:4573040..4572645 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4573040&end=4572645&gene=yjgH&aa=mvertavfpagrhslyaehrysaairsgdllfvsgqvgsredgtpepdfqqqvrlafdnlhatlaaagctfddiidvtsfhtdpenqfedimtvkneifsappypnwtavgvtwlagfdfeikviaripeq Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjgH+AND+escherichia+coli Pubmed(yjgH)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yjgH Textpresso(yjgH)] | |||
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Revision as of 22:55, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yjgH |
|---|---|
| Gene Synonym(s) |
ECK4242, b4248, JW4206[1] |
| Product Desc. |
hypothetical protein[2]; predicted mRNA endoribonuclease[3] Function unknown[4] |
| Product Synonyms(s) |
predicted mRNA endoribonuclease product[1], B4248 product[2][1], YjgH product[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. The rat homolog PSP (perchloric acid-soluble protein) has been reported to have endoribonuclease activity, Endoribonuclease L, against ss mRNA, inhibiting translation, but this activity has not been demonstrated for other members.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.