yhbJ:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''yhbJ'' | ''yhbJ'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3194, b3205, JW3172''<ref name='LIB:Riley_2006'/> | ''ECK3194, b3205, JW3172''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted P-loop containing ATPase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted P-loop containing ATPase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase<ref name='LIB:EcoGene'/> | Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted protein with nucleoside triphosphate hydrolase domain<ref name='LIB:Riley_2006'/>, B3205<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted protein with nucleoside triphosphate hydrolase domain<ref name='LIB:Riley_2006'/>, B3205<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
'''Biological Process''' | |||
* GO:0006396 RNA processing ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
* GO:0048518 positive regulation of biological process ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO | transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yhbJ&loc=MG1655:3345137..3345991,W3110:3346970..3347824,DH10B:3442882..3443736,REL606:3282350..3283204 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3282350&end=3283204&gene=yhbJ&aa=mvlmivsgrsgsgksvalraledmgfycvdnlpvvllpdlartladreisaavsidvrnmpespeifeqamsnlpdafspqllfldadrntlirrysdtrrlhplssknlslesaidkesdlleplrsradlivdtsemsvhelaemlrtrllgkrereltmvfesfgfkhgipidadyvfdvrflpnphwdpklrpmtgldkpvaafldrhtevhnfiyqtrsylelwlpmletnnrsyltvaigctggkhrsvyiaeqladyfrsrgknvqsrhrtlekrkp Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhbJ+AND+escherichia+coli Pubmed(yhbJ)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yhbJ Textpresso(yhbJ)] | |||
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Revision as of 23:01, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yhbJ |
|---|---|
| Gene Synonym(s) |
ECK3194, b3205, JW3172[1] |
| Product Desc. |
predicted P-loop containing ATPase[2][3] Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase[4] |
| Product Synonyms(s) |
predicted protein with nucleoside triphosphate hydrolase domain[1], B3205[2][1], YhbJ[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[2], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr[2], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Unprocessed glmZ upregulates glmS mRNA, so yhbJ mediates the negative feedback regulation of glmS, through glmZ, by the GlmS product glucosamine-6-phosphate. AFMB Structural Genomics target No. 26 (http://afmb.cnrs-mrs.fr/article171.html). The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr. UPF0042 family. YhbJ binds ATP and GTP and is an NTPase (Luciano, 2009).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.