patA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''patA'' | ''patA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3063, b3073, JW5510, oat, pat, patA''<ref name='LIB:Riley_2006'/> | ''ECK3063, b3073, JW5510, oat, pat, patA'', ygjG<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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G7596<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | G7596<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent<ref name='LIB:EcoGene'/> | Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3073<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3073<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:patA|patA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:patA|patA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ygjG&loc=MG1655:3217489..3218895,W3110:3218123..3219529,DH10B:3315234..3316640 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3315234&end=3316640&gene=ygjG&aa=mitefvfipifaiaagvaqslqylnryhvireppehilnrlpssasalacsahalnliekrtldheemkalnrevieyfkehvnpgfleyrksvtaggdygavewqagslntlvdtqgqefidclggfgifnvghrnpvvvsavqnqlakqplhsqelldplramlaktlaaltpgklkysffcnsgtesveaalklakayqsprgkftfiatsgafhgkslgalsatakstfrkpfmpllpgfrhvpfgnieamrtalneckktgddvaavilepiqgeggvilpppgyltavrklcdefgalmildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatiateevfsvlfdnpflhtttfggnplacaaalatinvlleqnlpaqaeqkgdmlldgfrqlareypdlvqeargkgmlmaiefvdneigynfasemfrqrvlvagtlnnaktirieppltltieqcelvikaarkalaamrvsveea Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygjG+AND+escherichia+coli Pubmed(ygjG)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ygjG Textpresso(ygjG)] | |||
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Revision as of 23:01, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
patA |
|---|---|
| Gene Synonym(s) |
ECK3063, b3073, JW5510, oat, pat, patA, ygjG[1] |
| Product Desc. |
Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent[4] |
| Product Synonyms(s) |
putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent[1], B3073[2][1], YgjG[2][1], Oat[2][1], Pat[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
AFMB Structural Genomics target No. 29 (http://afmb.cnrs-mrs.fr/article171.html). The pat gene, mapped to 89.1 minutes, was thought to encode this activity. No ORF in the metB-argH region is a candidate. perhaps the pat mutation is a ygjG regulatory mutation and ygjG is the pat structural gene. YgjG also transaminates cadaverine and spermidine.YdcW couples with YgjG to convert putrescine to gamma-aminobutyric acid.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.