plsY:Quickview: Difference between revisions
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''plsY'' | ''plsY'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK3049, b3059, JW3031''<ref name='LIB:Riley_2006'/> | ''ECK3049, b3059, JW3031'', ygiH<ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
conserved inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | conserved inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Probable acylphosphate:glycerol-3-phosphate acyltransferase<ref name='LIB:EcoGene'/> | Probable acylphosphate:glycerol-3-phosphate acyltransferase<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgiH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgiH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:plsY|plsY]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:plsY|plsY]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=ygiH&loc=MG1655:3202716..3203333,W3110:3203350..3203967,DH10B:3300461..3301078 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3300461&end=3301078&gene=ygiH&aa=msaiapgmiliaylcgsissailvcrlcglpdprtsgsgnpgatnvlriggkgaavavlifdvlkgmlpvwgayelgvspfwlgliaiaaclghiwpvffgfkggkgvatafgaiapigwdltgvmagtwlltvllsgysslgaivsaliapfyvwwfkpqftfpvsmlsclillrhhdniqrlwrrqetkiwtkfkrkrekdpe Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygiH+AND+escherichia+coli Pubmed(ygiH)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ygiH Textpresso(ygiH)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 23:01, 21 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
plsY |
|---|---|
| Gene Synonym(s) |
ECK3049, b3059, JW3031, ygiH[1] |
| Product Desc. |
conserved inner membrane protein[2][3] Probable acylphosphate:glycerol-3-phosphate acyltransferase[4] |
| Product Synonyms(s) |
conserved inner membrane protein[1], B3059[2][1], YgiH[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
ygiH(plsY) and plsX are synthetic lethals and cannot be simultaneously deleted, implicating ygiH(plsY) involvement in phospholipid biosynthesis (Yoshimura, 2007). Homologous to the PlsY acylphosphate:glycerol-3-phosphate acyltransferase (UniProt: P0A4Q0) of S. pneumoniae, which identifies a function for the UPF0078 family (COG0344). S. pneumoniae PlsX and PlsY work together as a two-step glycerol-3-phosphate acylation, the first step in phosphatidic acid synthesis, an intermediate in phospholipid synthesis (Lu, 2006). PlsXY homologs are present in E. coli, but PlsXY apparently cannot substitute for the single step reaction catalyzed by PlsB, which is essental in E. coli.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.