msrC:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''yebR'' | ''yebR'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK1831, b1832, JW1821''<ref name='LIB:Riley_2006'/> | ''ECK1831, b1832, JW1821''<ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Free methionine-(R)-sulfoxide reductase<ref name='LIB:EcoGene'/> | Free methionine-(R)-sulfoxide reductase<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
conserved protein<ref name='LIB:Riley_2006'/>, B1832<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | conserved protein<ref name='LIB:Riley_2006'/>, B1832<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
'''Biological Process''' | |||
* GO:0006979 response to oxidative stress ([http://www.geneontology.org/GO.evidence.shtml EXP]) | |||
'''Molecular Function''' | |||
* GO:0016671 oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:yebR|yebR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yebR|yebR]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=yebR&loc=MG1655:1914206..1913655,W3110:1917896..1917345,DH10B:2004777..2004226,REL606:1894759..1894208 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1894759&end=1894208&gene=yebR&aa=mliligwqiqvrqpsdyimnktefyadlnrdfnalmagetsflatlantsallyerltdinwagfylleddtlvlgpfqgkiacvripvgrgvcgtavarnqvqriedvhvfdghiacdaasnseivlplvvknqiigvldidstvfgrftdedeqglrqlvaqlekvlattdykkffasvag Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yebR+AND+escherichia+coli Pubmed(yebR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yebR Textpresso(yebR)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 23:09, 21 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yebR |
|---|---|
| Gene Synonym(s) |
ECK1831, b1832, JW1821[1] |
| Product Desc. |
Free methionine-(R)-sulfoxide reductase[4] |
| Product Synonyms(s) | |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Multiple alignment and RBS predictions support the annotation of native YebR as a 165 aa protein. A fully functional enzyme was translated efficiently initiating at this start site using a clone that also expressed a longer version with an N-terminal His-tag extension (Lin, 2007). Contains GAF domain. UPF0067 and COG1956 first functional member.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.