ydiN:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ydiN''  
''ydiN''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1689, b1691, JW5274''<ref name='LIB:Riley_2006'/>
''ECK1689, b1691, JW5274''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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YdiN MFS transporter<ref name='LIB:EcoCyc10.6'/>; putative amino acid/amine MFS transporter<ref name='LIB:EcoCyc11.1'/>
YdiN MFS transporter<ref name='LIB:EcoCyc10.6'/>; putative amino acid/amine MFS transporter<ref name='LIB:EcoCyc11.1'/>
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Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation<ref name='LIB:EcoGene'/>
Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted transporter<ref name='LIB:Riley_2006'/>, B1691<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted transporter<ref name='LIB:Riley_2006'/>, B1691<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0015292 uniporter activity ([http://www.geneontology.org/GO.evidence.shtml ISS])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ydiN|ydiN]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydiN|ydiN]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ydiN&loc=MG1655:1770536..1771801,W3110:1774226..1775491,DH10B:1861107..1862372,REL606:1749778..1751043 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1749778&end=1751043&gene=ydiN&aa=mkmsqnkafstpfilavlciyfsyflhgisvitlaqnmsslaekfstdnagiaylisgiglgrlisilffgvisdkfgrravilmavimyllfffgipacpnltlayglavcvgiansaldtggypalmecfpkasgsavilvkamvsfgqmfypmlvsymllnniwygygliipgilfvlitlmllkskfpsqlvdasvtnelpqmnskplvwlegvssvlfgvaafstfyvivvwmpkyamafagmseaealktisyysmgslvcvfifaallkkmvrpiwanvfnsalatitaaiiylypsplvcnagafvigfsaaggilqlgvsvmseffpkskakvtsiymmmgglanfviplitgylsniglqyiivldftfallalitaiivfiryyrvfiipendvrfgerkfctrlntikhrg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydiN+AND+escherichia+coli Pubmed(ydiN)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ydiN Textpresso(ydiN)]


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Revision as of 23:10, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ydiN

Gene Synonym(s)

ECK1689, b1691, JW5274[1]

Product Desc.

YdiN MFS transporter[2]; putative amino acid/amine MFS transporter[3]

Putative transporter, function unknown; membrane protein; upregulated in shikimate-producer during carbon starvation[4]

Product Synonyms(s)

predicted transporter[1], B1691[2][1], YdiN[2][1]

Function from GO

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydiN[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ydiN)    Textpresso(ydiN)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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Major Facilitator Superfamily (MFS). YdiN is upregulated in shikimate-producer during carbon starvation (Johansson, 2006). ydiN is in an operon with shikimate genes ydiB and aroD. YdiN may be involved in the transport of shikimate or byproducts (quinic acid and 3-dehydroshikimic acid) of its overproduction: a second transport system for shikimate has not yet been mapped (Brown, 1976; Knop, 2001).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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