ydaM:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ydaM'' | ''ydaM'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1338, b1341, JW5206''<ref name='LIB:Riley_2006'/> | ''ECK1338, b1341, JW5206''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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diguanylate cyclase<ref name='LIB:EcoCyc10.6'/>; diguanylate cyclase, transcriptional modulator<ref name='LIB:EcoCyc11.1'/> | diguanylate cyclase<ref name='LIB:EcoCyc10.6'/>; diguanylate cyclase, transcriptional modulator<ref name='LIB:EcoCyc11.1'/> | ||
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Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC<ref name='LIB:EcoGene'/> | Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B1341<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B1341<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ydaM|ydaM]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ydaM|ydaM]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ydaM&loc=MG1655:1405819..1404587,W3110:1409509..1408277,DH10B:1495215..1493983,REL606:1404965..1403733 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1404965&end=1403733&gene=ydaM&aa=mtwlfcdriatkidknngismithnfntldlltspvwivspfeeqliyansaakllmqdltfsqlrtgpysvssqkelpkylsdlqnqhdiieiltvqrkeeetalscrlvlrkltetepviifegieapatlglkasrsanyqrkkqgfyarffltnsapmllidpsrdgqivdanlaalnfygynhetmcqkhtweinmlgrrvmpimheishlpgghkplnfvhkladgstrhvqtyagpieiygdklmlcivhditeqkrleeqlehaahhdamtgllnrrqfyhitepgqmqhlaiaqdyslllidtdrfkhindlyghskgdevlcalartlescarkgdlvfrwggeefvlllprtpldtalslaetirvsvakvsisglprftvsigvahhegnesidelfkrvddalyrakndgrnrvlaa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydaM+AND+escherichia+coli Pubmed(ydaM)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ydaM Textpresso(ydaM)] | |||
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Revision as of 23:15, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ydaM |
|---|---|
| Gene Synonym(s) |
ECK1338, b1341, JW5206[1] |
| Product Desc. |
diguanylate cyclase[2]; diguanylate cyclase, transcriptional modulator[3] Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC[4] |
| Product Synonyms(s) |
predicted diguanylate cyclase, GGDEF domain signalling protein[1], B1341[2][1], YdaM[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YdaM has a central PAS domain, then a C-terminal diguanylate cyclase GGDEF domain. RpoS regulon (Weber, 2006). YdaM expression is thermoregulated and may act as a thermosensor for curli control (Weber, 2006). YdaM/Gmr(YciR) constitute an RpoS-regulated c-di-GMP synthesis/degradation module inversely regulated by Hns and controlling the expression of curli genes (Weber, 2006). YdaM has diguanylate cyclase activity in vitro (Weber, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.