ycdT:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ycdT'' | ''ycdT'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/> | ''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Probable diguanylate cyclase, function unknown<ref name='LIB:EcoGene'/> | Probable diguanylate cyclase, function unknown<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0043789 diguanylate cyclase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Biological Process''' | |||
* GO:0051271 negative regulation of cell motion ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ycdT&loc=MG1655:1092099..1093457,W3110:1093298..1094656,DH10B:1146027..1148721,REL606:1109161..1110519 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1109161&end=1110519&gene=ycdT&aa=mekdylrisstvlvsllfglalvlvnswfnqpgveevvprstylmvmialffidtvafifmqlyfiydrrqfsncvlslaflscliyfvitviiiqqiieerltssvvqndiaiyylfrqmslciliflalvnkvsentkqrnlfskkmtlcislffvfggpivahilsshyesynlhiaeltnengqvvwkasyvtimifmwltllsvnlyfnglrydiwngvtviafcavlynisllfmsrysvstwyisrtievvskltvmvifmchifsalrvtkniahrdpltnifnrnyffneltvqsasaqktpycvmimdidhfkkvndtwghpvgdqviktvvniigksirpddllarvggeefgvlltdidterakalaerirenverltgdnpeyaipqkvtisigavvtqenalnpneiyrladnalyeaketgrnkvvvrdvvnfcesp Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycdT+AND+escherichia+coli Pubmed(ycdT)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ycdT Textpresso(ycdT)] | |||
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Revision as of 23:17, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ycdT |
|---|---|
| Gene Synonym(s) |
ECK1015, b1025, JW5143[1] |
| Product Desc. |
predicted diguanylate cyclase[2][3] Probable diguanylate cyclase, function unknown[4] |
| Product Synonyms(s) | |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YcdT is homolgous to Y. pestis hemin storage gene hmsT, but is unable to complement hmsT mutations. Shown not to be a regulator of the divergent pgaABCD operon. Codon usage indicates ycdT is an alien (horizontal) gene. YcdT has a C-terminal putative diguanylate cyclase GGDEF domain.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.