elfD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ycbR'' | ''ycbR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0930, b0939, JW0922''<ref name='LIB:Riley_2006'/> | ''ECK0930, b0939, JW0922''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted periplasmic pilin chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted periplasmic pilin chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Putative periplasmic pilus chaperone, induced by AI-2 pheromone, function unknown<ref name='LIB:EcoGene'/> | Putative periplasmic pilus chaperone, induced by AI-2 pheromone, function unknown<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted periplasmic pilin chaperone<ref name='LIB:Riley_2006'/>, B0939<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcbR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted periplasmic pilin chaperone<ref name='LIB:Riley_2006'/>, B0939<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcbR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ycbR|ycbR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ycbR|ycbR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ycbR&loc=MG1655:997713..998414,W3110:998912..999613,DH10B:1051641..1052342,REL606:1015581..1016282 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1015581&end=1016282&gene=ycbR&aa=mktcitkgivtvsltaillscssawaagkggiglaatrlvysegeeqislgvrntspdvpyliqswvmtpdnkksadfiitpplfvlnpanenllrimyigaplakdretlfftsvravpsttkrkegntlkiatqsviklfwrpkglayplgeapaklrctssadmvtvsnptpyfitltdlkiggkvvknqmispfdkyqfslpkgaknssvtyrtindygaetpqlncks Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycbR+AND+escherichia+coli Pubmed(ycbR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ycbR Textpresso(ycbR)] | |||
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Revision as of 23:17, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ycbR |
|---|---|
| Gene Synonym(s) |
ECK0930, b0939, JW0922[1] |
| Product Desc. |
predicted periplasmic pilin chaperone[2][3] Putative periplasmic pilus chaperone, induced by AI-2 pheromone, function unknown[4] |
| Product Synonyms(s) |
predicted periplasmic pilin chaperone[1], B0939[2][1], YcbR[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Probable false positive lipoprotein prediction, Cys not conserved. First 26 aa are a predicted type I signal peptide. YcbR has Ig-like domains: pfam PF00345 aligns to N-terminal residues 31-149, and pfam PF02753 aligns to C-terminal residues 154-227.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.