ycaC:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ycaC''  
''ycaC''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0888, b0897, JW0880''<ref name='LIB:Riley_2006'/>
''ECK0888, b0897, JW0880''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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putative cysteine hydrolase<ref name='LIB:EcoCyc10.6'/>; predicted hydrolase<ref name='LIB:EcoCyc11.1'/>;  
putative cysteine hydrolase<ref name='LIB:EcoCyc10.6'/>; predicted hydrolase<ref name='LIB:EcoCyc11.1'/>;  
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Function unknown, hydrolase; homologous to pyrazinamidase and carbamoylsarcosine amidohydrolase; homooctamer<ref name='LIB:EcoGene'/>
Function unknown, hydrolase; homologous to pyrazinamidase and carbamoylsarcosine amidohydrolase; homooctamer<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted hydrolase<ref name='LIB:Riley_2006'/>, B0897<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted hydrolase<ref name='LIB:Riley_2006'/>, B0897<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Cellular Component'''
* GO:0005624 membrane fraction ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005739 mitochondrion ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ycaC|ycaC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycaC|ycaC]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ycaC&loc=MG1655:944780..944154,W3110:945979..945353,DH10B:998708..998082,REL606:962650..962024 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=962650&end=962024&gene=ycaC&aa=mtkpyvrldkndaavllvdhqagllslvrdiepdkfknnvlalgdlakyfnlptilttsfetgpngplvpelkaqfpdtpyiarpgninawdnedfvkavkatgkkqliiagvvtevcvafpalsaieegfdvfvvtdasgtfneitrhsawdrlsqagaqlmtwfgvacelhrdwrndieglatlfsnhipdyrnlmtsydtltkqk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycaC+AND+escherichia+coli Pubmed(ycaC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ycaC Textpresso(ycaC)]


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Revision as of 23:18, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ycaC

Gene Synonym(s)

ECK0888, b0897, JW0880[1]

Product Desc.

putative cysteine hydrolase[2]; predicted hydrolase[3];

Component of predicted hydrolase[3]

Function unknown, hydrolase; homologous to pyrazinamidase and carbamoylsarcosine amidohydrolase; homooctamer[4]

Product Synonyms(s)

predicted hydrolase[1], B0897[2][1], YcaC[2][1]

Function from GO

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycaC[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ycaC)    Textpresso(ycaC)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Leu-155 is a Met-155 in the crystallized protein, a commercial GAD prep from Worthington. This may be either a strain polymorphism or a sequencing error.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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