yahA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''yahA'' | ''yahA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0313, b0315, JW0307, yahA'''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK0313, b0315, JW0307, yahA'''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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phosphodiesterase, c-di-GMP-specific<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | phosphodiesterase, c-di-GMP-specific<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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c-di-GMP-specific phosphodiesterase, PDE-A; reaction product is 5'pGpG; dependent on Mg+2 or Mn+2, Ca+2 inhibitory; optimum pH 9.35; monomeric<ref name='LIB:EcoGene'/> | c-di-GMP-specific phosphodiesterase, PDE-A; reaction product is 5'pGpG; dependent on Mg+2 or Mn+2, Ca+2 inhibitory; optimum pH 9.35; monomeric<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B0315<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YahA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B0315<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YahA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yahA|yahA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yahA|yahA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yahA&loc=MG1655:331595..332683,W3110:331595..332683,DH10B:307145..308233,REL606:305020..306108 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=305020&end=306108&gene=yahA&aa=mnscdfrvflqefgttvhlslpgsvsekerlllkllmqgmsvteisqyrnrsaktishqkkqlfeklgiqsditfwrdiffqynpeiisatgsnshryindnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgylysppvpgnkfisewvmkagg Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yahA+AND+escherichia+coli Pubmed(yahA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yahA Textpresso(yahA)] | |||
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Revision as of 23:22, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yahA |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
phosphodiesterase, c-di-GMP-specific[2][3] c-di-GMP-specific phosphodiesterase, PDE-A; reaction product is 5'pGpG; dependent on Mg+2 or Mn+2, Ca+2 inhibitory; optimum pH 9.35; monomeric[4] |
| Product Synonyms(s) |
predicted DNA-binding transcriptional regulator[1], B0315[2][1], YahA[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YahA has a C-terminal EAL domain, however, it lacks the GGDEF motif. The EAL domain can independently perform PDE-A activity. YahA has an N-terminal LuxR putative regulator domain.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.