ubiD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ubiD'' | ''ubiD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3835, b3843, JW3819, yigC, yigY''<ref name='LIB:Riley_2006'/> | ''ECK3835, b3843, JW3819, yigC, yigY''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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3-octaprenyl-4-hydroxybenzoate decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | 3-octaprenyl-4-hydroxybenzoate decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis, third step; UbiX isozyme<ref name='LIB:EcoGene'/> | 3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis, third step; UbiX isozyme<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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3-octaprenyl-4-hydroxybenzoate decarboxylase<ref name='LIB:Riley_2006'/>, YigY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YigC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UbiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B3843<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | 3-octaprenyl-4-hydroxybenzoate decarboxylase<ref name='LIB:Riley_2006'/>, YigY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YigC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UbiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B3843<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0006744 ubiquinone biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Molecular Function''' | |||
* GO:0008694 3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ubiD|ubiD]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ubiD|ubiD]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ubiD&loc=MG1655:4023011..4024504,W3110:3611693..3610200,REL606:4003459..4004952,DH10B:4121931..4123424 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4121931&end=4123424&gene=ubiD&aa=mdamkyndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlcnlfgtpkrvamgmgqedvsalrevgkllaflkepeppkgfrdlfdklpqfkqvlnmptkrlrgapcqqkivsgddvdlnripimtcwpedaaplitwgltvtrgphkerqnlgiyrqqligknklimrwlshrggaldyqewcaahpgerfpvsvalgadpatilgavtpvpdtlseyafagllrgtktevvkcisndlevpasaeivlegyieqgetapegpygdhtgyynevdsfpvftvthitqredaiyhstytgrppdepavlgvalnevfvpilqkqfpeivdfylppegcsyrlavvtikkqyaghakrvmmgvwsflrqfmytkfvivcdddvnardwndviwaittrmdpardtvlventpidyldfaspvsglgskmgldatnkwpgetqrewgrpikkdpdvvahidaiwdelaifnngksa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ubiD+AND+escherichia+coli Pubmed(ubiD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ubiD Textpresso(ubiD)] | |||
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Revision as of 23:26, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ubiD |
|---|---|
| Gene Synonym(s) |
ECK3835, b3843, JW3819, yigC, yigY[1] |
| Product Desc. |
3-octaprenyl-4-hydroxybenzoate decarboxylase[2][3]; Component of 3-octaprenyl-4-hydroxybenzoate decarboxylase[3] 3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis, third step; UbiX isozyme[4] |
| Product Synonyms(s) |
3-octaprenyl-4-hydroxybenzoate decarboxylase[1], YigY[2][1], YigC[2][1], UbiD[2][1], B3843[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
AFMB Structural Genomics target No. 3 (http://afmb.cnrs-mrs.fr/article171.html)[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.