tdh:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''tdh''  
''tdh''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3606, b3616, JW3591''<ref name='LIB:Riley_2006'/>
''ECK3606, b3616, JW3591''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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Tdh<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Tdh<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Threonine dehydrogenase<ref name='LIB:EcoGene'/>
Threonine dehydrogenase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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threonine 3-dehydrogenase, NAD(P)-binding<ref name='LIB:Riley_2006'/>, B3616<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tdh<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
threonine 3-dehydrogenase, NAD(P)-binding<ref name='LIB:Riley_2006'/>, B3616<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tdh<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0008743 L-threonine 3-dehydrogenase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016491 oxidoreductase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0030145 manganese ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0046870 cadmium ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008270 zinc ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006565 L-serine catabolic process ([http://www.geneontology.org/GO.evidence.shtml IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:kbl-tdh|kbl-tdh]]<ref name='LIB:EcoCyc10.6'/>, OP00316, tdh  
transcription unit(s): [[:Category:Txn_unit:kbl-tdh|kbl-tdh]]<ref name='LIB:EcoCyc10.6'/>, OP00316, tdh  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=tdh&loc=MG1655:3789368..3788343,W3110:3849070..3850095,REL606:3732111..3731086,DH10B:3886945..3885920 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3886945&end=3885920&gene=tdh&aa=mkalsklkaeegiwmtdvpvpelghndllikirktaicgtdvhiynwdewsqktipvpmvvgheyvgevvgigqevkgfkigdrvsgeghitcghcrncrggrthlcrntigvgvnrpgcfaeylvipafnafkipdnisddlaaifdpfgnavhtalsfdlvgedvlvsgagpigimaaavakhvgarnvvitdvneyrlelarkmgitravnvakenlndvmaelgmtegfdvglemsgappafrtmldtmnhggriamlgippsdmsidwtkvifkglfikgiygremfetwykmaaliqsgldlspiithrfsiddfqkgfdamrsgqsgkvilswd Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tdh+AND+escherichia+coli Pubmed(tdh)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=tdh Textpresso(tdh)]


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Revision as of 23:29, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

tdh

Gene Synonym(s)

ECK3606, b3616, JW3591[1]

Product Desc.

Tdh[2][3];

Component of threonine dehydrogenase[2][3]

Threonine dehydrogenase[4]

Product Synonyms(s)

threonine 3-dehydrogenase, NAD(P)-binding[1], B3616[2][1], Tdh[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): kbl-tdh[2], OP00316, tdh

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(tdh)    Textpresso(tdh)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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