tdcF:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''tdcF'' | ''tdcF'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3102, b3113, JW5521, yhaR''<ref name='LIB:Riley_2006'/> | ''ECK3102, b3113, JW5521, yhaR''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted L-PSP (mRNA) endoribonuclease<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted L-PSP (mRNA) endoribonuclease<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Binds 2-ketoglutarate, function unknown<ref name='LIB:EcoGene'/> | Binds 2-ketoglutarate, function unknown<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted L-PSP (mRNA) endoribonuclease<ref name='LIB:Riley_2006'/>, B3113<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted L-PSP (mRNA) endoribonuclease<ref name='LIB:Riley_2006'/>, B3113<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:tdcABCDEFG|tdcABCDEFG]]<ref name='LIB:EcoCyc10.6'/>, OP00167, tdcABC | transcription unit(s): [[:Category:Txn_unit:tdcABCDEFG|tdcABCDEFG]]<ref name='LIB:EcoCyc10.6'/>, OP00167, tdcABC | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=tdcF&loc=MG1655:3258132..3257743,W3110:3258766..3258377,DH10B:3355877..3355488,REL606:3193144..3192755 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3193144&end=3192755&gene=tdcF&aa=mnsnrmlfhvplprrsdaggcmkkiietqrapgaigpyvqgvdlgsmvftsgqipvcpqtgeipadvqdqarlslenvkaivvaaglsvgdiikmtvfitdlndfatinevykqffdehqatyptrscvqvarlpkdvkleieaiavrsa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tdcF+AND+escherichia+coli Pubmed(tdcF)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=tdcF Textpresso(tdcF)] | |||
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Revision as of 23:29, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
tdcF |
|---|---|
| Gene Synonym(s) |
ECK3102, b3113, JW5521, yhaR[1] |
| Product Desc. |
predicted L-PSP (mRNA) endoribonuclease[2][3] Binds 2-ketoglutarate, function unknown[4] |
| Product Synonyms(s) |
predicted L-PSP (mRNA) endoribonuclease[1], B3113[2][1], YhaR[2][1], TdcF[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): tdcABCDEFG[2], OP00167, tdcABC |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. The rat homolog PSP (perchloric acid-soluble protein) has been reported to have endoribonuclease activity, Endoribonuclease L, against ss mRNA, inhibiting translation, but this activity has not been demonstrated for other members.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.