tadA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''tadA'' | ''tadA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2557, b2559, JW2543, yfhC''<ref name='LIB:Riley_2006'/> | ''ECK2557, b2559, JW2543, yfhC''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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TadA; of tRNA specific adenosine deaminase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | TadA; of tRNA specific adenosine deaminase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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A34-tRNA adenosine deaminase; point mutation confers resistance to HokC(Gef)-mediated cell killing; essential gene; homodimeric<ref name='LIB:EcoGene'/> | A34-tRNA adenosine deaminase; point mutation confers resistance to HokC(Gef)-mediated cell killing; essential gene; homodimeric<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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tRNA-specific adenosine deaminase<ref name='LIB:Riley_2006'/>, TadA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2559<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | tRNA-specific adenosine deaminase<ref name='LIB:Riley_2006'/>, TadA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2559<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0002100 tRNA wobble adenosine to inosine editing ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Molecular Function''' | |||
* GO:0008251 tRNA-specific adenosine deaminase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:tadA|tadA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:tadA|tadA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=tadA&loc=MG1655:2695912..2695376,W3110:2696546..2696010,DH10B:2787644..2787141,REL606:2619382..2618846 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2619382&end=2618846&gene=tadA&aa=mrrafitgvfflsevefsheywmrhaltlakrawderevpvgavlvhnnrvigegwnrpigrhdptahaeimalrqgglvmqnyrlidatlyvtlepcvmcagamihsrigrvvfgardaktgaagslmdvlhhpgmnhrveitegiladecaallsdffrmrrqeikaqkkaqsstd Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tadA+AND+escherichia+coli Pubmed(tadA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=tadA Textpresso(tadA)] | |||
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Revision as of 23:29, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
tadA |
|---|---|
| Gene Synonym(s) |
ECK2557, b2559, JW2543, yfhC[1] |
| Product Desc. |
TadA; of tRNA specific adenosine deaminase[2][3]; Component of tRNA-specific adenosine deaminase[3] A34-tRNA adenosine deaminase; point mutation confers resistance to HokC(Gef)-mediated cell killing; essential gene; homodimeric[4] |
| Product Synonyms(s) |
tRNA-specific adenosine deaminase[1], TadA[2][1], YfhC[2][1], B2559[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Previously reported non-essential nature was mistakenly based on an insertion that removed the last 17 aa, but the truncated enzyme is active. Three possible start sites annotated in various orthologs: -11, +1, and +12; alignment results ambiguous; +1 chosen due to best RBS.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.