rlmC:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''rumA'' | ''rumA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2779, b2785, JW2756, ygcA''<ref name='LIB:Riley_2006'/> | ''ECK2779, b2785, JW2756, ygcA''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | 23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent<ref name='LIB:EcoGene'/> | 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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23S rRNA (uracil-5)-methyltransferase<ref name='LIB:Riley_2006'/>, B2785<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RumA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | 23S rRNA (uracil-5)-methyltransferase<ref name='LIB:Riley_2006'/>, B2785<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RumA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:rumA|rumA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:rumA|rumA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=rumA&loc=MG1655:2913022..2911721,W3110:2913656..2912355,REL606:2803928..2802627,DH10B:3006900..3005599 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3006900&end=3005599&gene=rumA&aa=maqfysakrrtttrqiitvsvndldsfgqgvarhngktlfipgllpqenaevtvtedkkqyarakvvrrlsdsperetprcphfgvcggcqqqhasvdlqqrsksaalarlmkhdvseviadvpwgyrrrarlslnylpktqqlqmgfrkagssdivdvkqcpilapqleallpkvraclgslqamrhlghvelvqatsgtlmilrhtaplssadreklerfshsegldlylapdseiletvsgempwydsnglrltfsprdfiqvnagvnqkmvaralewldvqpedrvldlfcgmgnftlplatqaasvvgvegvpalvekgqqnarlnglqnvtfyhenleedvtkqpwakngfdkvlldparagaagvmqqiiklepirivyvscnpatlardseallkagytiarlamldmfphtghlesmvlfsrvk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rumA+AND+escherichia+coli Pubmed(rumA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rumA Textpresso(rumA)] | |||
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Revision as of 23:33, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
rumA |
|---|---|
| Gene Synonym(s) |
ECK2779, b2785, JW2756, ygcA[1] |
| Product Desc. |
23S ribosomal RNA 5-methyluridine methyltransferase[2][3] 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent[4] |
| Product Synonyms(s) |
23S rRNA (uracil-5)-methyltransferase[1], B2785[2][1], YgcA[2][1], RumA[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Although this purified proten had its N-terminus sequenced (reported in Medline 21883956, Agarwalla et al.) it is not included in the Verified set since translation was forced at the predicted start codon. All other evidence does point to this being the correct start. The initial Met is cleaved off.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.