rsmF:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''rsmF'' | ''rsmF'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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16S rRNA m<sup>5</sup>C1407 specific methyltransferase<ref name='PMID:16678201'/><ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16 | 16S rRNA m<sup>5</sup>C1407 specific methyltransferase<ref name='PMID:16678201'/><ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16 | ||
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16S rRNA m(5)C1407 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/> | 16S rRNA m(5)C1407 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yebU|yebU]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yebU|yebU]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=rsmF&loc=MG1655:1918247..1919686,W3110:1921937..1923376,REL606:1898800..1900239 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1898800&end=1900239&gene=rsmF&aa=mlvaqhtvyfpdafltqmreampstlsfddflaacqrplrrsirvntlkisvadflqltapygwtltpipwceegfwierdnedalplgstaehlsglfyiqeassmlpvaalfadgnapqrvmdvaaapgskttqisarmnnegailanefsasrvkvlhanisrcgisnvalthfdgrvfgaavpemfdailldapcsgegvvrkdpdalknwspesnqeiaatqrelidsafhalrpggtlvystctlnqeeneavclwlketypdaveflplgdlfpgankalteegflhvfpqiydcegffvarlrktqaipalpapkykvgnfpfspvkdreagqirqaatgvglnwdenlrlwqrdkelwlfpvgiealigkvrfsrlgiklaethnkgyrwqheavialaspdnmnafeltpqeaeewyrgrdvypqaapvaddvlvtfqhqpiglakrigsrlknsyprelvrdgklftgna Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rsmF+AND+escherichia+coli Pubmed(rsmF)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rsmF Textpresso(rsmF)] | |||
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Revision as of 23:34, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
rsmF |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
16S rRNA m5C1407 specific methyltransferase[3][2][4]. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16 S rRNA, but does not interfere with methylation at C1962 in 23 S rRNA. Purified recombinant YebU protein retains its specificity for C1407 in vitro, and methylates 30 S subunits (but not naked 16 S rRNA or 70 S ribosomes) isolated from yebU knockout strains.[3]. Andersen and Douthwaite suggest that a more appropriate designation for yebU would be the rRNA small subunit methyltransferase gene rsmF. 16S rRNA m(5)C1407 methyltransferase, SAM-dependent[5] |
| Product Synonyms(s) |
predicted methyltransferase[1], B1835[2][1], YebU[2][1], RsmF[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 Andersen, NM & Douthwaite, S (2006) YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. J. Mol. Biol. 359 777-86 PubMed
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.