rsmE:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rsmE''  
''rsmE''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yggJ, ECK2941, b2946, JW2913''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yggJ, ECK2941, b2946, JW2913''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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16S rRNA m(3)U1498 methyltransferase<ref name='LIB:EcoCyc10.6'/>; 16S rRNA m<sup>3</sup>U1498 methyltransferase<ref name='LIB:EcoCyc11.1'/>
16S rRNA m(3)U1498 methyltransferase<ref name='LIB:EcoCyc10.6'/>; 16S rRNA m<sup>3</sup>U1498 methyltransferase<ref name='LIB:EcoCyc11.1'/>
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16S rRNA m(3)U1498 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
16S rRNA m(3)U1498 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein<ref name='LIB:Riley_2006'/>, B2946<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YggJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted protein<ref name='LIB:Riley_2006'/>, B2946<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YggJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0070042 rRNA (uridine-N3-)-methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016436 rRNA (uridine) methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0031167 rRNA methylation ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yggJ|yggJ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yggJ|yggJ]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rsmE&loc=MG1655:3089156..3089887,W3110:3089790..3090521,REL606:2976885..2977616 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2976885&end=2977616&gene=rsmE&aa=mgrrrgfltmripriyhpepltshshialcedaanhigrvlrmgpgqalqlfdgsnqvfdaeitsaskksvevkvlegqiddresplhihlgqvmsrgekmeftiqksielgvslitplfsercgvkldserlnkklqqwqkiaiaaceqcgrnrvpeirpamdleawcaeqdeglklnlhprasnsintlplpvervrlligpegglsadeiamtaryqftdillgprvlrtettaltaitalqvrfgdlg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rsmE+AND+escherichia+coli Pubmed(rsmE)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rsmE Textpresso(rsmE)]


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Revision as of 23:34, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rsmE

Gene Synonym(s)

yggJ, ECK2941, b2946, JW2913[1][2]

Product Desc.

16S rRNA m(3)U1498 methyltransferase[2]; 16S rRNA m3U1498 methyltransferase[3]

16S rRNA m(3)U1498 methyltransferase, SAM-dependent[4]

Product Synonyms(s)

predicted protein[1], B2946[2][1], YggJ[2][1], RsmE[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yggJ[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rsmE)    Textpresso(rsmE)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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YggJ is RsmE; although growth is not obviously impaired, wildtype outcompetes rsmE- (Basturea, 2006). Member of the m(3)U MTases family DUF558 and the SAM MTase alpha/beta knot superfamily. Exponential reduction in cell growth only observed when co-cultured with wild type. The N-terminal domain (1-72) resembles an RNA binding domain. RrmA and YibK are structural paralogs. otherPDB (H. influenzae): 1NXZ, 1VHX. AFMB Structural Genomics target No. 129 (http://afmb.cnrs-mrs.fr/article171.html).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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