rluD:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rluD''  
''rluD''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2592, b2594, JW2576, sfhB, yfiI, G7351''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK2592, b2594, JW2576, sfhB, yfiI, G7351''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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23S rRNA pseudouridine synthase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
23S rRNA pseudouridine synthase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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23S rRNA pseudouridine synthase; specific to U1911, U1915, and U1917; mutation supresses ftsH(Ts) mutants; null mutants grow very poorly<ref name='LIB:EcoGene'/>
23S rRNA pseudouridine synthase; specific to U1911, U1915, and U1917; mutation supresses ftsH(Ts) mutants; null mutants grow very poorly<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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23S rRNA pseudouridine synthase<ref name='LIB:Riley_2006'/>, B2594<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RluD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
23S rRNA pseudouridine synthase<ref name='LIB:Riley_2006'/>, B2594<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RluD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0009982 pseudouridine synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0031118 rRNA pseudouridine synthesis ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0000027 ribosomal large subunit assembly and maintenance ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0000455 enzyme-directed rRNA pseudouridine synthesis ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfiH|yfiH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfiH|yfiH]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rluD&loc=MG1655:2734033..2733053,W3110:2734667..2733687,REL606:2657419..2656439,DH10B:2825798..2824818 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2825798&end=2824818&gene=rluD&aa=maqrvqltatvsenqlgqrldqalaemfpdysrsrikewildqrvlvngkvcdkpkekvlggeqvainaeieeearfepqdipldivyedediiiinkprdlvvhpgagnpdgtvlnallhyyppiadvpragivhrldkdttglmvvaktvpaqtrlveslqrreitreyeavaighmtaggtvdepisrhptkrthmavhpmgkpavthyrimehfrvhtrlrlrletgrthqirvhmahithplvgdpvyggrprppkgaseafistlrkfdrqalhatmlrlyhpisgiemewhapipqdmvelievmradfeehkdevdwl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rluD+AND+escherichia+coli Pubmed(rluD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rluD Textpresso(rluD)]


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Revision as of 00:27, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rluD

Gene Synonym(s)

ECK2592, b2594, JW2576, sfhB, yfiI, G7351[1][2]

Product Desc.

23S rRNA pseudouridine synthase[2][3]

23S rRNA pseudouridine synthase; specific to U1911, U1915, and U1917; mutation supresses ftsH(Ts) mutants; null mutants grow very poorly[4]

Product Synonyms(s)

23S rRNA pseudouridine synthase[1], B2594[2][1], YfiI[2][1], RluD[2][1], SfhB[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfiH[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rluD)    Textpresso(rluD)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The very poor growth of rluD mutants can be suppressed by a point mutation in prfB and a role in translation termination for the 23S rRNA helix 69 pseudouridines has been demonstrated (Ejby, 2007).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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