rluA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rluA''  
''rluA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0059, b0058, JW0057, yabO''<ref name='LIB:Riley_2006'/>
''ECK0059, b0058, JW0057, yabO''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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23S rRNA and tRNA pseudouridine synthase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
23S rRNA and tRNA pseudouridine synthase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Dual specificity tRNA and rRNA pseudouridine synthase; specific to 23S rRNA U746 and tRNAphe U32; non-essential gene<ref name='LIB:EcoGene'/>
Dual specificity tRNA and rRNA pseudouridine synthase; specific to 23S rRNA U746 and tRNAphe U32; non-essential gene<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)<ref name='LIB:Riley_2006'/>, B0058<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RluA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)<ref name='LIB:Riley_2006'/>, B0058<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RluA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0031119 tRNA pseudouridine synthesis ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0000455 enzyme-directed rRNA pseudouridine synthesis ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0031118 rRNA pseudouridine synthesis ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0009451 RNA modification ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0001522 pseudouridine synthesis ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0008033 tRNA processing ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006364 rRNA processing ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0009982 pseudouridine synthase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rluA&loc=MG1655:60346..59687,W3110:60346..59687,DH10B:60346..59687,REL606:63150..62491 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=63150&end=62491&gene=rluA&aa=mgmenynppqepwlvilyqddhimvvnkpsgllsvpgrleehkdsvmtriqrdypqaesvhrldmatsgvivvaltkaaerelkrqfrerepkkqyvarvwghpspaeglvdlplicdwpnrpkqkvcyetgkpaqteyevveyaadntarvvlkpitgrshqlrvhmlalghpilgdrfyaspearamaprlllhaemltithpaygnsmtfkapadf Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rluA+AND+escherichia+coli Pubmed(rluA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rluA Textpresso(rluA)]


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Revision as of 00:27, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rluA

Gene Synonym(s)

ECK0059, b0058, JW0057, yabO[1]

Product Desc.

23S rRNA and tRNA pseudouridine synthase[2][3]

Dual specificity tRNA and rRNA pseudouridine synthase; specific to 23S rRNA U746 and tRNAphe U32; non-essential gene[4]

Product Synonyms(s)

pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)[1], B0058[2][1], YabO[2][1], RluA[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rluA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rluA)    Textpresso(rluA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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