ribD:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''ribD'' | ''ribD'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK0408, b0414, JW0404, ribG, ribH, nusII''<ref name='LIB:Riley_2006'/> | ''ECK0408, b0414, JW0404, ribG, ribH, nusII''<ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
Bifunctional enzyme for second and third steps in riboflavin biosynthesis; 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate deaminase; ribosyl reductase<ref name='LIB:EcoGene'/> | Bifunctional enzyme for second and third steps in riboflavin biosynthesis; 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate deaminase; ribosyl reductase<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
fused diaminohydroxyphosphoribosylaminopyrimidine deaminase<ref name='LIB:Riley_2006'/>, 5-amino-6-(5-phosphoribosylamino) uracil reductase<ref name='LIB:Riley_2006'/>, B0414<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RibG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RibD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase<ref name='LIB:Riley_2006'/>, 5-amino-6-(5-phosphoribosylamino) uracil reductase<ref name='LIB:Riley_2006'/>, B0414<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RibG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RibD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
'''Molecular Function''' | |||
* GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
* GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
* GO:0050661 NADP binding ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Biological Process''' | |||
* GO:0009231 riboflavin biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:ybaD|ybaD]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ybaD|ybaD]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=ribD&loc=MG1655:432679..433782,W3110:432679..433782,DH10B:372010..373113,REL606:401877..402980 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=401877&end=402980&gene=ribD&aa=mqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevhalrmagekakgatayvtlepcshhgrtppccdaliaagvarvvasmqdpnpqvagrglyrlqqagidvshglmmseaeqlnkgflkrmrtgfpyiqlklgasldgrtamasgesqwitspqarrdvqllraqshailtssatvladdpaltvrwseldeqtqalypqqnlrqpirividsqnrvtpvhrivqqpgetwfartqedsrewpetvrtllipehkghldlvvlmmqlgkqqinsiwveagptlagallqaglvdelivyiapkllgsdarglctlpglekladapqfkfkeirhvgpdvclhlvga Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ribD+AND+escherichia+coli Pubmed(ribD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ribD Textpresso(ribD)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:28, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ribD |
|---|---|
| Gene Synonym(s) |
ECK0408, b0414, JW0404, ribG, ribH, nusII[1] |
| Product Desc. |
Bifunctional enzyme for second and third steps in riboflavin biosynthesis; 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate deaminase; ribosyl reductase[2] |
| Product Synonyms(s) |
fused diaminohydroxyphosphoribosylaminopyrimidine deaminase[1], 5-amino-6-(5-phosphoribosylamino) uracil reductase[1], B0414[3][1], RibG[3][1], RibD[3][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7