ypdA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch
 
(18 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|ypdA}}{{Tab|Gene|ypdA}}{{Tab|Gene Product(s)|ypdA}}{{Tab|Expression|ypdA}}{{Tab|Evolution|ypdA}}{{Tab|On One Page|ypdA}}{{TabsBottom}}
{{Tab On|Quickview|ypdA}}{{Tab|Gene|ypdA}}{{Tab|Gene Product(s)|ypdA}}{{Tab|Expression|ypdA}}{{Tab|Evolution|ypdA}}{{Tab|On One Page|ypdA}}{{TabsBottom}}
Line 8: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..C469f90a361323-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.6514.T49b035b2c8ed3-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="T49b035b2c8ed3"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[ypdA:Gene|''ypdA]]'' (synonyms: ''ECK2376, b2380, JW5388'')<ref name='LIB:Riley_2006'/>
''ypdA''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[ypdA:Gene_Product(s)|YpdA product]]<ref name='LIB:Riley_2006'/>: predicted sensory kinase in two-component system with YpdB<ref name='LIB:Riley_2006'/>, B2380<ref name='LIB:EcoCyc10.6'/>, YpdA<ref name='LIB:EcoCyc10.6'/>
''ECK2376, b2380, JW5388''<ref name='LIB:Riley_2006'/>, JW5388''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
predicted sensory kinase in two-component system with YpdB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted sensory kinase in two-component system with YpdB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Putative sensor kinase, function unknown<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted sensory kinase in two-component system with YpdB<ref name='LIB:Riley_2006'/>, B2380<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2376, JW5388, b2380''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:txn_units:ypdA|ypdA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ypdA|ypdA]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..C469f90a361323&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ypdA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7243]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003818&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ypdA&loc=MG1655%3A2496693..2498390,W3110%3A2504117..2505814,REL606%3A2432896..2434593,DH10B%3A2588458..2590155,BW2952%3A2382498..2384195]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2382498&end=2384195&gene=ypdA&aa=mheifnmllavfdraalmliclfflirirlfrellhksahspkellavtaifslfalfstwsgvpvegslvnvriiavmsggilfgpwvgiitgviagihrylidiggvtaipcfitsilagcisgwinlkipkaqrwrvgilggmlcetltmilvivwapttalgidivskigipmilgsvcigfivllvqsvegekeasaarqaklaldianktlplfrhvnseslrkvceiirddihadavaitntdhvlayvgvgehnyqngddfispttrqamnygkiiiknndeahrtpeihsmlviplwekgvvtgtlkiyychahqitsslqemavglsqiistqlevsraeqlremankaelralqskinphflfnalnaisssirlnpdtarqlifnlsrylrynielkddeqidikkelyqikdyiaieqarfgdkltviydideevnccipslliqplvenaivhgiqpckgkgvvtisvaecgnrvriavrdtghgidpkvierveanempgnkigllnvhhrvkllygeglhirrlepgteiafyipnqrtpvasqatlll]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ypdA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ypdA]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.6514.T49b035b2c8ed3&page=6514&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..C469f90a361323-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.6514.T49b035b2c8ed3--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
YpdAB may be a cognate two-component system sensor-regulator pair. In addition to the C-terminal histidine protein kinase and ATPase domains, YpdA contains a central GAF domain. YpdA has six N-terminal transmembrane helices; helices 2-4 comprise a LytS-like domain that may indicate an involvement in cell-wall metabolism.<ref name='LIB:EcoGene'/>
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:39, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ypdA

Gene Synonym(s)

ECK2376, b2380, JW5388[1], JW5388

Product Desc.

predicted sensory kinase in two-component system with YpdB[2][3]

Putative sensor kinase, function unknown[4]

Product Synonyms(s)

predicted sensory kinase in two-component system with YpdB[1], B2380[2][1], YpdA[2][1] , ECK2376, JW5388, b2380

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ypdA[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YpdAB may be a cognate two-component system sensor-regulator pair. In addition to the C-terminal histidine protein kinase and ATPase domains, YpdA contains a central GAF domain. YpdA has six N-terminal transmembrane helices; helices 2-4 comprise a LytS-like domain that may indicate an involvement in cell-wall metabolism.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ypdA:Quickview&oldid=1394069"