dacB:Quickview: Difference between revisions

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{{Tab On|Quickview|dacB}}{{Tab|Gene|dacB}}{{Tab|Gene Product(s)|dacB}}{{Tab|Expression|dacB}}{{Tab|Evolution|dacB}}{{Tab|On One Page|dacB}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[dacB:Gene|''dacB]]'' (synonyms: ''ECK3171, b3182, JW3149, pbp'')<ref name='LIB:Riley_2006'/>
''dacB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[dacB:Gene_Product(s)|DacB product]]<ref name='LIB:Riley_2006'/>: D-alanyl-D-alanine carboxypeptidase product, B3182 product, D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 product
''ECK3171, b3182, JW3149, pbp''<ref name='LIB:Riley_2006'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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EG10202-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
EG10202<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


D-alanine D-alanine carboxypeptidase PBP4; penicillin-binding protein 4<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''D-alanyl-D-alanine carboxypeptidase<ref name='LIB:Riley_2006'/>, B3182<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DacB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3171, JW3149, b3182''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dacB|dacB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:dacB|dacB]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dacB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10202]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000196&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dacB&loc=MG1655%3A3326985..3328418,W3110%3A3328818..3330251,REL606%3A3264197..3265630,DH10B%3A3424730..3426163,BW2952%3A3214133..3215566]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3214133&end=3215566&gene=dacB&aa=mrfsrfiigltsciafsvqaanvdeyitqlpaganlalmvqkvgasapaidyhsqqmalpastqkvitalaaliqlgpdfrftttletkgnvengvlkgdlvarfgadptlkrqdirnmvatlkksgvnqidgnvlidtsifashdkapgwpwndmtqcfsappaaaivdrncfsvslysapkpgdmafirvasyypvtmfsqvrtlprgsaeaqyceldvvpgdlnrftltgclpqrseplplafavqdgasyagailkdelkqagitwsgtllrqtqvnepgtvvaskqsaplhdllkimlkksdnmiadtvfrmigharfnvpgtwragsdavrqilrqqagvdigntiiadgsglsrhnliapatmmqvlqyiaqhdnelnfismlplagydgslqyraglhqagvdgkvsaktgslqgvynlagfittasgqrmafvqylsgyavepadqrnrriplvrfesrlykdiyqnn]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dacB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dacB]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
False positive lipoprotein prediction, verified SPI substrate. Mutant has biofilm defect.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dacB

Gene Synonym(s)

ECK3171, b3182, JW3149, pbp[1]

Product Desc.

EG10202[2][3]

D-alanine D-alanine carboxypeptidase PBP4; penicillin-binding protein 4[4]

Product Synonyms(s)

D-alanyl-D-alanine carboxypeptidase[1], B3182[2][1], DacB[2][1], D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4[2][1] , ECK3171, JW3149, b3182

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dacB[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


False positive lipoprotein prediction, verified SPI substrate. Mutant has biofilm defect.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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