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{{Tab On|Quickview|visC}}{{Tab|Gene|visC}}{{Tab|Gene Product(s)|visC}}{{Tab|Expression|visC}}{{Tab|Evolution|visC}}{{Tab|On One Page|visC}}{{TabsBottom}}
{{Tab On|Quickview|visC}}{{Tab|Gene|visC}}{{Tab|Gene Product(s)|visC}}{{Tab|Expression|visC}}{{Tab|Evolution|visC}}{{Tab|On One Page|visC}}{{TabsBottom}}
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{|   id="Z49b0284586752"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[visC:Gene|''visC]]'' (synonyms: ''ECK2901, b2906, JW2874'')<ref name='LIB:Riley_2006'/>
''ubiI'' <ref name='PMID:23709220'/> (formerly ''visC'')
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[visC:Gene_Product(s)|VisC product]]<ref name='LIB:Riley_2006'/>: predicted oxidoreductase with FAD/NAD(P)-binding domain product, B2906 product
''ECK2901, b2906, JW2874''<ref name='LIB:Riley_2006'/>, ''visC''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted oxidoreductase, FAD/NAD(P)-binding domain<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted oxidoreductase, FAD/NAD(P)-binding domain<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative FAD-dependent oxidoreductase, function unknown; downstream of and homologous to ubiH (visB)<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted oxidoreductase with FAD/NAD(P)-binding domain<ref name='LIB:Riley_2006'/>, B2906<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VisC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2901, JW2874, b2906''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:visC|visC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:visC|visC]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=visC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11333]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001304&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=visC&loc=MG1655%3A3050339..3049137,W3110%3A3050973..3049771,REL606%3A2938068..2936866,DH10B%3A3144209..3143007,BW2952%3A2936285..2937487]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2936285&end=2937487&gene=visC&aa=mqsvdvaivgggmvglavacglqgsglrvavleqrvqeplaanappqlrvsainaaseklltrlgvwqdilsrrascyhgmevwdkdsfghisfddqsmgyshlghivensvihyalwnkahqssditllapaelqqvawgenetfltlkdgsmltarlvigadganswlrnkadipltfwdyqhhalvatirteephdavarqvfhgegilaflplsdphlcsivwslspeeaqrmqqasedefnralniafdnrlglckvesarqvfpltgryarqfashrlalvgdaahtihplagqgvnlgfmdaaeliaelkrlhrqgkdigqyiylrryersrkhsaalmlagmqgfrdlfsgtnpakkllrdiglkladtlpgvkpqlirqamglndlpewlr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=visC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=visC]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
A deletion of visC has no effect on photosensitivity or aerobic respiration (Nakahigashi, 1992). visC, ubiH, ubiF and mhpA are paralogs. Probable false positive lipoprotein prediction, Cys not conserved.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 18:41, 28 April 2017

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ubiI [1] (formerly visC)

Gene Synonym(s)

ECK2901, b2906, JW2874[2], visC

Product Desc.

predicted oxidoreductase, FAD/NAD(P)-binding domain[3][4]

Putative FAD-dependent oxidoreductase, function unknown; downstream of and homologous to ubiH (visB)[5]

Product Synonyms(s)

predicted oxidoreductase with FAD/NAD(P)-binding domain[2], B2906[3][2], VisC[3][2] , ECK2901, JW2874, b2906

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): visC[3]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


A deletion of visC has no effect on photosensitivity or aerobic respiration (Nakahigashi, 1992). visC, ubiH, ubiF and mhpA are paralogs. Probable false positive lipoprotein prediction, Cys not conserved.[5]



References

[back to top]


  1. ↑ Hajj Chehade, M et al. (2013) ubiI, a new gene in Escherichia coli coenzyme Q biosynthesis, is involved in aerobic C5-hydroxylation. J. Biol. Chem. 288 20085-92 PubMed
  2. ↑ 2.0 2.1 2.2 2.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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