csiR:Quickview: Difference between revisions

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{{Tab On|Quickview|csiR}}{{Tab|Gene|csiR}}{{Tab|Gene Product(s)|csiR}}{{Tab|Expression|csiR}}{{Tab|Evolution|csiR}}{{Tab|On One Page|csiR}}{{TabsBottom}}
{{Tab On|Quickview|csiR}}{{Tab|Gene|csiR}}{{Tab|Gene Product(s)|csiR}}{{Tab|Expression|csiR}}{{Tab|Evolution|csiR}}{{Tab|On One Page|csiR}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[csiR:Gene|''csiR]]'' (synonyms: ''ECK2658, b2664, JW2639, gabC, ygaE'')<ref name='LIB:Riley_2006'/>
''csiR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[csiR:Gene_Product(s)|CsiR product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional dual regulator product, B2664 product, YgaE product, GabC product
''ECK2658, b2664, JW2639, gabC, ygaE''<ref name='LIB:Riley_2006'/>, ygaE''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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CsiR transcriptional repressor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
CsiR transcriptional repressor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Repressor of csiD promoter<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B2664<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsiR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GabC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2658, gabC, JW2639, ygaE, b2664''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s):   
transcription unit(s):   
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=csiR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12386]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002251&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=csiR&loc=MG1655%3A2793696..2794358,W3110%3A2794330..2794992,DH10B%3A2885461..2886123,REL606%3A2690427..2691089,BW2952%3A2679508..2680170]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2679508&end=2680170&gene=csiR&aa=mirshtmtitsldgyrwlkndiirgnfqpdeklrmslltsryalgvgplrealsqlvaerlvtvvnqkgyrvasmseqelldifdaranmeamlvslaiarggdeweadvlakahllskleacdasekmldewdlrhqafhtaivagcgshyllqmrerlfdlaaryrfiwlrrtvlsvemledkhdqhqtltaavlardtaraselmrqhlltpipiiqqamagn]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csiR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csiR]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
csiR (gabC) may not be part of the gab operon, appears to regulate the csiD promoter but not the gabD promoter, and is not responsive to gamma-aminobutyrate<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
<references/>
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

csiR

Gene Synonym(s)

ECK2658, b2664, JW2639, gabC, ygaE[1], ygaE

Product Desc.

CsiR transcriptional repressor[2][3]

Repressor of csiD promoter[4]

Product Synonyms(s)

DNA-binding transcriptional dual regulator[1], B2664[2][1], CsiR[2][1], YgaE[2][1], GabC[2][1] , ECK2658, gabC, JW2639, ygaE, b2664

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


csiR (gabC) may not be part of the gab operon, appears to regulate the csiD promoter but not the gabD promoter, and is not responsive to gamma-aminobutyrate[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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