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{{Tab On|Quickview|hcaF}}{{Tab|Gene|hcaF}}{{Tab|Gene Product(s)|hcaF}}{{Tab|Expression|hcaF}}{{Tab|Evolution|hcaF}}{{Tab|On One Page|hcaF}}{{TabsBottom}}
{{Tab On|Quickview|hcaF}}{{Tab|Gene|hcaF}}{{Tab|Gene Product(s)|hcaF}}{{Tab|Expression|hcaF}}{{Tab|Evolution|hcaF}}{{Tab|On One Page|hcaF}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hcaF:Gene|''hcaF]]'' (synonyms: ''ECK2536, b2539, JW2523, hcaA2, digB, phdC2, hcaA, yfhV'')<ref name='LIB:Riley_2006'/>
''hcaF''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hcaF:Gene_Product(s)|HcaF product]]<ref name='LIB:Riley_2006'/>: 3-phenylpropionate dioxygenase, small (beta) subunit product, B2539 product, HcaA product, YfhV product, DigB product, HcaA2 product, 3-phenylpropionate dioxygenase, small subunit product
''ECK2536, b2539, JW2523, hcaA2, digB, phdC2, hcaA, yfhV''<ref name='LIB:Riley_2006'/>, hcaB, yfhV''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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3-phenylpropionate dioxygenase, &beta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
3-phenylpropionate dioxygenase, &beta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:3-phenylpropionate dioxygenase system|3-phenylpropionate dioxygenase system]]<ref name='LIB:EcoCyc10.6'/>,[[:Category:Complex:3-phenylpropionate dioxygenase system|3-phenylpropionate dioxygenase system]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:3-phenylpropionate dioxygenase system|3-phenylpropionate dioxygenase system]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:3-phenylpropionate dioxygenase system|3-phenylpropionate dioxygenase system]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


3-phenylpropionate/cinnamic acid dioxygenase, beta subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''3-phenylpropionate dioxygenase, small (beta) subunit<ref name='LIB:Riley_2006'/>, B2539<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DigB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaA2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 3-phenylpropionate dioxygenase, small subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , digB, ECK2536, hcaA, hcaA2, hcaB, JW2523, phdC2, yfhV, b2539''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hcaF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=M015]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004474&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hcaF&loc=MG1655%3A2668412..2668930,W3110%3A2669046..2669564,REL606%3A2591089..2591607,DH10B%3A2760177..2760695,BW2952%3A2554217..2554735]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2554217&end=2554735&gene=hcaF&aa=msaqvslelhhrisqflfheasllddwkfrdwlaqldeeirytmrttvnaqtrdrrkgvqppttwifndtkdqlerriarletgmawaeeppsrtrhlisncqisetdipnvfavrvnyllyraqkerdetfyvgtrfdkvrrleddnwrllerdivldqavitshnlsvlf]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hcaF]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hcaF

Gene Synonym(s)

ECK2536, b2539, JW2523, hcaA2, digB, phdC2, hcaA, yfhV[1], hcaB, yfhV

Product Desc.

3-phenylpropionate dioxygenase, β subunit[2][3];

Component of 3-phenylpropionate dioxygenase system[2][3]; 3-phenylpropionate dioxygenase system[2][3]

3-phenylpropionate/cinnamic acid dioxygenase, beta subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4]

Product Synonyms(s)

3-phenylpropionate dioxygenase, small (beta) subunit[1], B2539[2][1], HcaA[2][1], YfhV[2][1], DigB[2][1], HcaF[2][1], HcaA2[2][1], 3-phenylpropionate dioxygenase, small subunit[2][1] , digB, ECK2536, hcaA, hcaA2, hcaB, JW2523, phdC2, yfhV, b2539

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hcaEFCBD[2]

Regulation/Activity
Quick Links



        

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Notes

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Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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