paaD:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''paaD''  
''paaD''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1388, b1391, JW5217, ydbQ''<ref name='LIB:Riley_2006'/>
''ECK1388, b1391, JW5217, ydbQ''<ref name='LIB:Riley_2006'/>, ydbQ''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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putative subunit of phenylacetate-CoA oxygenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
putative subunit of phenylacetate-CoA oxygenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Phenylacetyl-CoA oxygenase, gamma subunit; heteromultimeric diiron oxygenase component; phenylacetic acid degradation<ref name='LIB:EcoGene'/>
Phenylacetyl-CoA oxygenase, gamma subunit; heteromultimeric diiron oxygenase component; phenylacetic acid degradation<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation<ref name='LIB:Riley_2006'/>, B1391<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdbQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation<ref name='LIB:Riley_2006'/>, B1391<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdbQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1388, JW5217, ydbQ, b1391''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:paaABCDEFGHIJK|paaABCDEFGHIJK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:paaABCDEFGHIJK|paaABCDEFGHIJK]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=paaD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6712]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003306&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=paaD&loc=MG1655%3A1453949..1454446,W3110%3A1457639..1458136,DH10B%3A1544544..1545041,BW2952%3A1346002..1346505]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1346002&end=1346505&gene=paaD&aa=mgmqrlatiappqvheiwallsqipdpeipvltitdlgmvrnvtqmgegwvigftptysgcpatehligaireamttngftpvqvvlqldpawttdwmtpdarerlreygisppaghschahlppevrcprcasvhttlisefgstackalyrcdscrepfdyfkci]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=paaD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=paaD]]&nbsp;&nbsp;


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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

paaD

Gene Synonym(s)

ECK1388, b1391, JW5217, ydbQ[1], ydbQ

Product Desc.

putative subunit of phenylacetate-CoA oxygenase[2][3];

Component of putative phenylacetate-CoA oxygenase[3]

Phenylacetyl-CoA oxygenase, gamma subunit; heteromultimeric diiron oxygenase component; phenylacetic acid degradation[4]

Product Synonyms(s)

predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation[1], B1391[2][1], YdbQ[2][1], PaaD[2][1] , ECK1388, JW5217, ydbQ, b1391

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): paaABCDEFGHIJK[2]

Regulation/Activity
Quick Links



        

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Notes

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PaaABCDE is a multi-subunit oxygenase that hydroxylates phenylacetyl-CoA.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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